Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1923
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 51 2e-07
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 30 0.34
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 29 0.46
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 29 0.80
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 27 2.4
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 25 7.4
SPBC36.10 |||mitochondrial intermembrane space protein sorting p... 25 7.4
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 25 9.8
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 50.8 bits (116), Expect = 2e-07
Identities = 29/63 (46%), Positives = 38/63 (60%)
Frame = +1
Query: 472 TQFCERLVHIRNRHADVVHTMAQGVLELKESHEVDPGTENSIQYFLDRFYMSRISIRMLI 651
+ F L IR RH +V +A L+++E +NSIQ FLDRFYMSRI IRML+
Sbjct: 165 SNFAYLLNTIRTRHDNVAVEIA---LDIQEYRRKTNQIDNSIQIFLDRFYMSRIGIRMLL 221
Query: 652 NQH 660
Q+
Sbjct: 222 GQY 224
Score = 46.4 bits (105), Expect = 4e-06
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +1
Query: 208 LDFYSQFNPSPLSIKQFIDFGLNACESKSFT---FLKKELPVRLANIMKEIALLPENLLR 378
++ +Q+ + LS+KQ + FG N F FL+ ELP+RLA ++++ L L
Sbjct: 12 VNLLAQYPQTGLSLKQLVYFGKNPTPGTLFRAGLFLRDELPIRLARRIQDLQNLSPMLRS 71
Query: 379 MPSVGLVNQWYERSFEEITRFEQME 453
M + V Y RS EEI + +E
Sbjct: 72 MKRISSVKAAYGRSMEEIIELKGVE 96
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 29.9 bits (64), Expect = 0.34
Identities = 28/115 (24%), Positives = 51/115 (44%)
Frame = +1
Query: 169 RLAGAIFTNVTKMLDFYSQFNPSPLSIKQFIDFGLNACESKSFTFLKKELPVRLANIMKE 348
RL +T + +M+DF+S F+ S K+ +D L E + T K++ L +++
Sbjct: 977 RLIQNEYTTLCEMVDFFSSFSLRECSFKE-VDLALELLERATIT---KDVYFYLKDLVYR 1032
Query: 349 IALLPENLLRMPSVGLVNQWYERSFEEITRFEQMEPDPPTLTQFCERLVHIRNRH 513
LL N + ++ E SF + + +E D Q E +H ++H
Sbjct: 1033 RFLLQVNWAEIID---AHEDLESSFFPMVKEIMLESDFLIWLQHMEHNIHDESKH 1084
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 29.5 bits (63), Expect = 0.46
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 346 EIALLPENLLRMPSVGLVNQWYERSF-EEITRFEQMEPDPPTLTQFCERLV 495
++A L ++L PSV + W E EE+ F ++ P P + T+ ERL+
Sbjct: 346 DMASLNDSLYSHPSVSKQSTWTEEELKEELESFGELVPVPFSSTKAFERLL 396
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 28.7 bits (61), Expect = 0.80
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +1
Query: 391 GLVNQWYERSFEEITRFEQMEPDP--PTLTQFCERLVHIRNRHADVVHTMAQGVLELKES 564
G+ + Y R FEE Q P+ L+Q C +V + R + +++ QG ++ +
Sbjct: 929 GICYKLYTRGFEEKGMLGQTPPEVLRTALSQVCLNVVPLVKRFSSAGNSVNQGSIKKFMN 988
Query: 565 HEVDPGTENSIQYFLDR 615
+DP + ++ L +
Sbjct: 989 SLIDPPNDATVDLALKK 1005
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +1
Query: 322 VRLANIMKEIALLPENLLRMPSVGLVNQWYERSFEEITRFE----QMEPDPPTLTQFCE- 486
+R+ IM+ A+L L P +GL + + +FE + + + E D TL F E
Sbjct: 1089 LRVQTIMRIFAILTRVLSDSPQIGLSLEKFLTNFEALIKMNVDILRDEIDKSTLNSFLES 1148
Query: 487 RLVHI 501
+VH+
Sbjct: 1149 AIVHV 1153
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 121 YYFSNT*IFIRETFKMRLAGAIFTNVTKMLDFYSQFNP 234
YYF+NT I E FK R + +V L F ++ P
Sbjct: 256 YYFNNTSSTISEEFKKRNKECQYDSVLNRLTFPTEQYP 293
>SPBC36.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 648 KHPNRYATHVESVQEVLYGVLRSGI 574
K+PN +ATHV +V + VL +G+
Sbjct: 24 KYPNEHATHVIAVDTLDRKVLDNGV 48
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 343 KEIALLPENLLRMPSVGL-VNQWYERSFEE 429
K++ L+PEN++ P G+ W E + EE
Sbjct: 253 KDLGLIPENVIPAPVDGMGTKSWDELTTEE 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,966
Number of Sequences: 5004
Number of extensions: 53065
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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