Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1923
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0089 + 14359650-14359889,14360859-14361120,14361633-143618... 91 6e-19
07_03_1419 - 26428539-26428778,26429512-26429659,26429896-264300... 86 3e-17
10_08_0262 + 16307003-16308416,16309501-16309595,16309954-163099... 30 1.4
03_05_0862 + 28353235-28354431 30 1.4
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 29 3.3
03_06_0690 - 35571816-35572586 29 3.3
02_04_0332 + 22093387-22093550,22093753-22094056 29 4.4
02_02_0699 + 13055146-13055758,13056230-13056324 29 4.4
12_02_0155 + 14497847-14498012,14499612-14499695,14500196-14500551 28 5.8
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 28 5.8
06_01_0835 - 6315762-6316844 28 7.7
>03_03_0089 +
14359650-14359889,14360859-14361120,14361633-14361813,
14362141-14362288,14362836-14363040,14363304-14363362
Length = 364
Score = 91.5 bits (217), Expect = 6e-19
Identities = 57/147 (38%), Positives = 82/147 (55%), Gaps = 7/147 (4%)
Frame = +1
Query: 241 LSIKQFIDFGLNACES---KSFTFLKKELPVRLANIMKEIALLPENLLRMPSVGLVNQWY 411
++++ ++FG E +S FL++ELP+R+A ++ LP L P++ V WY
Sbjct: 26 VTLRYMMEFGARPTERNLLRSAQFLRRELPIRIARRALDLDSLPFGLSTKPAILKVRDWY 85
Query: 412 ERSFEEITRFEQMEPDPPTLTQFCERLVHIRNRHADVVHTMAQGVLELKE----SHEVDP 579
SF ++ F ++ L F E + IR RH +VV TMA GV +LK+ + P
Sbjct: 86 LDSFRDLRCFPEVRNRDDELA-FTEMIKMIRVRHNNVVPTMALGVRQLKKDLGGTKAFPP 144
Query: 580 GTENSIQYFLDRFYMSRISIRMLINQH 660
G + I FLDRFYMSRI IRMLI QH
Sbjct: 145 GIDE-IHQFLDRFYMSRIGIRMLIGQH 170
>07_03_1419 -
26428539-26428778,26429512-26429659,26429896-26430076,
26430285-26430546,26430946-26430975,26431355-26431591
Length = 365
Score = 85.8 bits (203), Expect = 3e-17
Identities = 62/156 (39%), Positives = 81/156 (51%), Gaps = 16/156 (10%)
Frame = +1
Query: 241 LSIKQFIDFGLNACESK---SFTFLKKELPVRLANIMKEIALLPENLLRMP--------- 384
+S++ ++FG E S FL+KELP+R+A E+ LP L R P
Sbjct: 25 VSLRYMMEFGSRPTERNLLLSAQFLQKELPIRIARRALELESLPFGLSRKPAILKVILGE 84
Query: 385 -SVGLVNQWYERSFEEITRFEQMEPDPPTLTQFCERLVHIRNRHADVVHTMAQGVLELK- 558
SV V WY SF +I F ++ L F + + I+ RH +VV TMA GV +LK
Sbjct: 85 WSVNKVRDWYLDSFRDIRYFPEVRNRNDELA-FTQMIKMIKVRHNNVVPTMALGVQQLKN 143
Query: 559 ESHEVD--PGTENSIQYFLDRFYMSRISIRMLINQH 660
E + P + I FLDRFYMSRI IRMLI QH
Sbjct: 144 EQYRTRKIPTAFDEIHEFLDRFYMSRIGIRMLIGQH 179
>10_08_0262 +
16307003-16308416,16309501-16309595,16309954-16309959,
16310567-16310671
Length = 539
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 421 FEEITRFEQMEPDPPTLTQFCERLVHIRNRHADVVHTMAQGVLELKESHEVDPGTENSIQ 600
F+ IT F + P C ++H++ H D + M + E +E +V+ G +++Q
Sbjct: 480 FDPITSFLFKDLGPDPYDSSCFWMLHVQENHLDKLKIMGRSQQE-EEEEDVESGKSDAVQ 538
>03_05_0862 + 28353235-28354431
Length = 398
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -3
Query: 610 PGSIVWSSPFRDPLRETLSALAHPGPSYERRQRAGSLCGQDVRRIGSASEDLVPSV 443
PG W S + + H G Y + ++R +GSAS +++PSV
Sbjct: 195 PGDRAWKSVKPTSIPAVVDVAVHRGQLYANTRYGMVYAFPELRGLGSASPEIIPSV 250
>05_03_0031 -
7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 565 ETLSALAHPGPSYERRQRAGSLCGQDVRRIGSASEDLVPSVQSVLFPRMSAR 410
+ + A+ + SY+ Q+AG L Q V + +AS L+ + + PR R
Sbjct: 406 QEIVAVENVSSSYDNNQKAGGLYNQVVVALPAASNSLLKDKGASVLPRRKTR 457
>03_06_0690 - 35571816-35572586
Length = 256
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 592 SSPFRDPLRETLSALAHPGPSYERRQRAGSLCGQDVRRIGSASEDL 455
++P DP E A A GP Y +R+R S+ D+ +A+ D+
Sbjct: 26 AAPLGDPAAEASGAQAAAGPPYSKRRRRPSVRLGDIGVHSAAAADV 71
>02_04_0332 + 22093387-22093550,22093753-22094056
Length = 155
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 532 SYERRQRAGSLCGQDVRRIG 473
S+ERRQRAG C +DV +G
Sbjct: 19 SHERRQRAGRSCARDVDGMG 38
>02_02_0699 + 13055146-13055758,13056230-13056324
Length = 235
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 418 SFEEITRFEQMEPDPPTLTQFCERLVHIRNRHADVVHTMAQGVLELKESH---EVDPGTE 588
S +EIT+F +M DP + ++ + A V +L+ +E+H EVD G+
Sbjct: 100 STKEITKFPEMTSDPDGKLDGKKEKLYPEQKEAIVSEISLPQILKKEETHIAVEVDDGSS 159
Query: 589 N 591
N
Sbjct: 160 N 160
>12_02_0155 + 14497847-14498012,14499612-14499695,14500196-14500551
Length = 201
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 528 YDGPGCARAERVSRSGSRNGE--LHTILPGQILHESHIYS 641
YDGP CA + S G+ NGE H +P + S Y+
Sbjct: 155 YDGPACAISRTGSSCGAGNGEQWSHCCIPSFVPRTSVSYA 194
>01_06_0923 + 33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 583 FRDPLRETLSALAHPGPSYERRQRAGSLCGQDVRRIGSASEDLVPSVQ 440
F +R TLSA + G + QR G Q + + + +DLVP ++
Sbjct: 857 FGPVIRSTLSAHSAVGVDIQAEQRRGGQSAQLAQELNLSLQDLVPRMR 904
>06_01_0835 - 6315762-6316844
Length = 360
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 592 SSPFRDPLRETLSALAHPGPSYERRQRAGSLCGQDVRRIGSASEDLVPSVQSVLFPR 422
SS F P LAH GP ++ + L Q +++ G A+ + S L PR
Sbjct: 107 SSSFASPANAAAVGLAHLGPEQIQQIQVQFLMQQQLQQRGMAASASASAAASYLGPR 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,732,345
Number of Sequences: 37544
Number of extensions: 337167
Number of successful extensions: 940
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -