Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1923
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M98552-5|AAA28207.1|  401|Caenorhabditis elegans Hypothetical pr...   183   1e-46
AF024499-7|AAB70358.3|  733|Caenorhabditis elegans Hypothetical ...    30   1.7  
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    29   2.2  
AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical ...    29   3.9  
AL132862-10|CAB60540.1|  122|Caenorhabditis elegans Hypothetical...    27   9.1  

>M98552-5|AAA28207.1|  401|Caenorhabditis elegans Hypothetical
           protein ZK370.5 protein.
          Length = 401

 Score =  183 bits (445), Expect = 1e-46
 Identities = 87/167 (52%), Positives = 116/167 (69%)
 Frame = +1

Query: 160 FKMRLAGAIFTNVTKMLDFYSQFNPSPLSIKQFIDFGLNACESKSFTFLKKELPVRLANI 339
           F  +L G    ++ K LD+YSQF PS L+I+Q++DFG     + S+TFLK EL VRLANI
Sbjct: 3   FSRKLLGPFVGSLAKKLDYYSQFQPSSLTIQQYLDFGRIGTSANSYTFLKNELLVRLANI 62

Query: 340 MKEIALLPENLLRMPSVGLVNQWYERSFEEITRFEQMEPDPPTLTQFCERLVHIRNRHAD 519
           M+E  LLP  LL+MPS  +V+ WY  SFE++  FE  +  P  + +F ++L  +  RHA 
Sbjct: 63  MQEFTLLPPKLLQMPSSKMVSNWYAESFEDLLLFEASDSSPEQVARFNDQLTVVLKRHAH 122

Query: 520 VVHTMAQGVLELKESHEVDPGTENSIQYFLDRFYMSRISIRMLINQH 660
           VV TMA+G++EL+ES  VD  +E  IQYFLDRFY++RISIRML NQH
Sbjct: 123 VVETMAEGLIELRESDGVDIASEKGIQYFLDRFYINRISIRMLQNQH 169


>AF024499-7|AAB70358.3|  733|Caenorhabditis elegans Hypothetical
           protein F42G2.6 protein.
          Length = 733

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 219 LAVQPFAVV-HQTIHRLRSERLREQIIHVPKKGATSQAREHNEGDSATP*EPTSNAFRGL 395
           L +Q + ++ + +  RL    L+ Q   +PK  A +QA+ H +  +      T++ +  L
Sbjct: 404 LEIQNYRILPNSSDKRLEEHELKTQSSTLPKPCAHAQAQAHAQAQAHAQAHETNDNWPKL 463

Query: 396 SQPMVRALIRGNN 434
              + RAL++G +
Sbjct: 464 MTELFRALLQGQS 476


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
            protein Y51A2D.15 protein.
          Length = 1222

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 424  EEITRFEQMEPDPPTLTQFCERLVHIRNRHADVVHTMAQGVLELKESHEVDPGTENSI 597
            EEI+R EQ+E +       CE L   R    ++V T  +  LEL+ +H+      N I
Sbjct: 941  EEISRREQLEKEHKMCRIHCENL---RRDITELVQTRDELSLELRRAHDTCHNKNNQI 995


>AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical
           protein Y81B9A.1 protein.
          Length = 579

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 237 RRVELRVEIKHFRHIRENRSC*PHFESFTYKYLSVR 130
           R  ELR E+ +  ++R N +   HFES   +YL ++
Sbjct: 534 RETELRKELANPMNVRYNNNTRAHFESHLDRYLDLK 569


>AL132862-10|CAB60540.1|  122|Caenorhabditis elegans Hypothetical
           protein Y73F8A.15 protein.
          Length = 122

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 154 ETFKMRLAGAIFTNVTKMLDFYSQFNPSPLSIKQFI 261
           +TF   + G IFT    +  + ++ NP PL +K  I
Sbjct: 42  DTFNFNVRGRIFTKALFVESYLTKPNPEPLILKSSI 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,573,027
Number of Sequences: 27780
Number of extensions: 297668
Number of successful extensions: 844
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)