Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1923
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.86 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.0  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   2.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.0  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   8.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 510 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 424
           P PY+D TF  + +RR ++  F+L   C  +
Sbjct: 215 PEPYIDITFVVIIRRRTLYYFFNLIVPCVLI 245


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 510 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 424
           P PYVD TF    +RR ++  F+L   C  +
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 510 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 424
           P PYVD TF    +RR ++  F+L   C  +
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 510 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 424
           P PYVD TF    +RR ++  F+L   C  +
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 510 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 424
           P PYVD TF    +RR ++  F+L   C  +
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 510 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 424
           P PYVD TF    +RR ++  F+L   C  +
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 510 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 424
           P PYVD TF    +RR ++  F+L   C  +
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 510 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 424
           P PYVD TF    +RR ++  F+L   C  +
Sbjct: 246 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 276


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 510 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 424
           P PYVD TF    +RR ++  F+L   C  +
Sbjct: 246 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 276


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 523 VHTMAQGVLELKESHEVDPGTENSIQYF 606
           VH    G   LK   E+DP T+    Y+
Sbjct: 71  VHEWPVGNDTLKSKMEIDPATQKDAGYY 98


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 490 LVHIRNRHADVVHTMAQGVLELKESHEV 573
           LV  R RH+ +  + A   L + E HE+
Sbjct: 427 LVEHRIRHSQIGISRAMSALRILEKHEL 454


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 212 ISTRSSTLRRCPSNNS*TSV 271
           ++T+ +TL R PS  S TSV
Sbjct: 351 LNTKCNTLERTPSKCSQTSV 370


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 594 HTILPGQILHESHIY 638
           H+I+ G +L+ SH+Y
Sbjct: 462 HSIVLGSLLNPSHMY 476


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 68  EKCVTVYCDCVLLH*N 115
           +K V +YC+C+L + N
Sbjct: 56  DKKVQLYCECILKNFN 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,186
Number of Sequences: 438
Number of extensions: 3767
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)