Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1921
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   5.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   5.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   7.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   7.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    20   9.4  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    20   9.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   9.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    20   9.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   9.4  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 159 CLTLRLIRNSTWTNYLIFVYIKYTKLLVL 73
           CL + L+    ++ YLI +YI    L+++
Sbjct: 230 CLKVDLLFKREFSYYLIQIYIPCCMLVIV 258


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 159 CLTLRLIRNSTWTNYLIFVYIKYTKLLVL 73
           CL + L+    ++ YLI +YI    L+++
Sbjct: 230 CLKVDLLFKREFSYYLIQIYIPCCMLVIV 258


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 6   NEFNNINFLRKLFF 47
           N +NN N+ +KL++
Sbjct: 101 NNYNNNNYNKKLYY 114


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 6   NEFNNINFLRKLFF 47
           N +NN N+ +KL++
Sbjct: 101 NNYNNNNYNKKLYY 114


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 281 GATNARQLA*FTLNVKQL 228
           G T    L  FTL VKQL
Sbjct: 131 GQTREHALLAFTLGVKQL 148


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 281 GATNARQLA*FTLNVKQL 228
           G T    L  FTL VKQL
Sbjct: 58  GQTREHALLAFTLGVKQL 75


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 232 CLTFNVN*ASCLALVAPV*DCSCVISDLP 318
           CL F+    SC+  V  V  C+   S  P
Sbjct: 149 CLVFSSGSVSCVPSVKHVAKCATDFSSWP 177


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 281 GATNARQLA*FTLNVKQL 228
           G T    L  FTL VKQL
Sbjct: 74  GQTREHALLAFTLGVKQL 91


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 281 GATNARQLA*FTLNVKQL 228
           G T    L  FTL VKQL
Sbjct: 131 GQTREHALLAFTLGVKQL 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,882
Number of Sequences: 438
Number of extensions: 1815
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)