Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1920
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 31 0.55
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.73
07_03_0846 - 21983581-21986055 29 1.7
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 1.7
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224 29 3.0
07_03_1086 + 23858419-23859423,23859527-23859610 29 3.0
01_06_0695 - 31292622-31293317 28 3.9
07_03_0626 + 20060013-20060273,20061017-20061274 27 6.8
06_01_0957 - 7378608-7378662,7378828-7379012 27 6.8
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 6.8
01_01_1235 - 10017728-10017766,10018891-10019352 27 6.8
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 6.8
10_08_0113 - 14896341-14897153 27 9.0
08_02_1485 - 27466761-27467753 27 9.0
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 9.0
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 27 9.0
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 27 9.0
01_06_0723 + 31501900-31502808,31502846-31503295 27 9.0
01_05_0118 + 18335065-18335553 27 9.0
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 438 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKN 322
PS TP ER S+D PR Y R+RD K++
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQH 403
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.73
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 169 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 303
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -1
Query: 311 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 162
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 82 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 180
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
Length = 787
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -1
Query: 353 GAVMHVLRKKTDSID----LRDPNGLRRRVSRFECETRLVKSH 237
G V+ L + TDS++ L +P+GL RRV F E+++ H
Sbjct: 340 GTVLRYLFQDTDSVNNSGGLLNPSGLLRRVRMFVPESQVTSMH 382
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 3.0
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +1
Query: 22 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 186
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 187 GKDMLTVEPRESGGSK 234
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -3
Query: 486 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 352
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 181 RLGWLRP*RRSGIIP 137
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>06_01_0957 - 7378608-7378662,7378828-7379012
Length = 79
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 347 VMHVLRKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPP 222
++ LR T +I +R P L R S R+ SH + PP
Sbjct: 14 LLDALRTTTAAIRVRAPAALSRAASEKIAVPRIAPSHAVPPP 55
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 188 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 292
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_01_1235 - 10017728-10017766,10018891-10019352
Length = 166
Score = 27.5 bits (58), Expect = 6.8
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = +1
Query: 103 GRAAGGAKLPSAGLCLNASKAEASLAESGKDM--LTVEPR---ESGGSKQCDFTSRVSHS 267
G GGA + + L+A+ L G + L + PR S + TS + S
Sbjct: 66 GEDGGGAGVRACSSDLSAAAFADELFREGALLRPLKLPPRLQTPSASAAASAATSPTAAS 125
Query: 268 KRETRRRSPFGSRRS 312
K + RSPF SRRS
Sbjct: 126 KAASSSRSPFASRRS 140
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 435 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSPRS 298
S +PR+ R YS R R+ RD+R ++++R R RS
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRS 188
>10_08_0113 - 14896341-14897153
Length = 270
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +1
Query: 370 LSSMSGLGIVCRRL----PFLAGCCAR 438
L++++GLGI RR P LAGCC R
Sbjct: 181 LAAIAGLGIPWRRSWPSPPSLAGCCCR 207
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 227 PPDSRGSTVSISLPDSARLASALEAFRHNPA 135
PP + G +S +P A LA++L + NPA
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPA 69
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 220 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 318
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -3
Query: 435 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSPRSKWASTSR 277
S +PR+ R S YS R R+ Y RSR + R RS+ S SR
Sbjct: 155 SPSPRRGRGRSRSYSRSRSRSRSYSRSRSRSLSGSPRAR-RELERSRSLSYSR 206
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = -1
Query: 329 KKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 150
KKT ++ + P+ R + + + +V S C D G+ ++ + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 486 PGAGLSLNRSQHDAALPSTTPRQERKS-STDYSEP 385
PG L + DAA +TT +++R++ DYS P
Sbjct: 93 PGRALGFFHKEQDAAAVATTRKRKRRAIIVDYSTP 127
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 178 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSR 306
A+ G + V P +GG+++ + ++ K T RR+ FG+R
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNR 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,480,480
Number of Sequences: 37544
Number of extensions: 348545
Number of successful extensions: 1124
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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