Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1919
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    32   0.082
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   2.3  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    25   9.4  

>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 32.3 bits (70), Expect = 0.082
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
 Frame = -2

Query: 307 SRRAFVYILYMVNA------IKSMSLVRFVRFPVLSFTIDSPNSTTTN-----FKYNGHW 161
           SRR F+YI+  +NA        S+    F + P LS  +DS NST  N        NG W
Sbjct: 61  SRRTFMYIVATLNASYPDHDFSSLQPTDFYKEPSLSRVVDSVNSTLNNIGRGRLSVNGIW 120

Query: 160 SSL*NIIPNRSISIFS 113
             +   I     S++S
Sbjct: 121 EIIDRHINLSDCSVYS 136


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 639 QRCLVAIFVSS*KGNRNCTFIFSKYSAFQTTHTSCIQFLRVLIDFQN-IEIFFY*SGVF 466
           +RC V + + S K  + C    S  + F  + T C+     L D QN + I FY  G F
Sbjct: 617 RRCSVTMLLLSQKAAKYCAVCNSIVAIFNPSQTKCL-----LADLQNELSICFYCGGHF 670


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -2

Query: 322 FC*NISRRAFVYILYMVNAIKSMSLVRFVRFPVLSFTIDSPN 197
           FC +IS+R  ++ +   ++  S+  VR++R P+L+ T   P+
Sbjct: 208 FCTSISQRNELFAVASQDSSLSVFDVRYLRTPMLTKTSSRPD 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,245,062
Number of Sequences: 5004
Number of extensions: 70273
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)