Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1918
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-23|CAE18026.1|  302|Caenorhabditis elegans Hypothetical p...   104   6e-23
Z69904-10|CAA93782.2|  754|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z69902-13|CAA93770.2|  754|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z66516-1|CAA91358.3|  251|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z68880-9|CAA93099.1|  255|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z68879-12|CAA93091.1|  255|Caenorhabditis elegans Hypothetical p...    28   6.6  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    28   6.6  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    28   6.6  
U88180-5|AAB42299.1|  340|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U46673-5|AAM51533.1|   91|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z99281-23|CAE18026.1|  302|Caenorhabditis elegans Hypothetical
           protein Y57G11C.43 protein.
          Length = 302

 Score =  104 bits (250), Expect = 6e-23
 Identities = 78/245 (31%), Positives = 128/245 (52%), Gaps = 25/245 (10%)
 Frame = +1

Query: 22  MPLIIICGTPVSGKTTRAKELKQFFEEKHGKTVEIVSEDEAIAKLGYEKNSMFLDSQKEK 201
           MPLII+ G P SGK+T    L + FEEK GK   I+ +++     G+++ + +  S KEK
Sbjct: 1   MPLIIVTGHPSSGKSTVVDRLAKKFEEK-GKDYLIIRDEDYG---GFDRKN-YEFSNKEK 55

Query: 202 RVRGYLKSEAIRLIGKDNVVILDGSNYIKGYRYELYCASKASKSTQCTIYTLRNHEEAWQ 381
            +R +++S+  + + K+ V+I D  NYIKGYRYEL+ A+K SK+T C +           
Sbjct: 56  DLRSWIRSQVQQNLTKNKVIICDALNYIKGYRYELFLAAKMSKTTYCVVECSPPVATCHW 115

Query: 382 ANQKRISTDNSDQYTEEVFNALTRLRFEEPNSNNRWDSPLFTV--------LPTD----- 522
            N+++      ++Y +E+ + L  +R+E P++  RW+ PLF V         P D     
Sbjct: 116 LNEQK---PEVERYPKEIIDQL-MMRYERPDTKLRWEKPLFEVKIGTAEKATPVDFDEDM 171

Query: 523 NIDLEN---IYKVLFEKK---------XXXXXXXXXXXXXXXTNFLYEVDKTTQDICKQI 666
            IDLE+    +  +FE +                        TNFL+E+D++TQD+   +
Sbjct: 172 AIDLEHPAPRFASIFEDEIVEWICNGTELTENQSTQTVPLAPTNFLHELDRSTQDVVTVL 231

Query: 667 LEAKQ 681
           L A++
Sbjct: 232 LNAQR 236


>Z69904-10|CAA93782.2|  754|Caenorhabditis elegans Hypothetical
           protein ZK20.6 protein.
          Length = 754

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +1

Query: 46  TPVSGKTTRAKELKQFF-----EEKHGKTVEIVSEDEAIAKLGYEKNSMFLDSQK-EKRV 207
           T +   T +++++  FF     E+    +  ++S D+    LGY     +LD +K EK++
Sbjct: 191 TKLLSNTIQSRDVSVFFDFGPAEDSRNVSRRLLSFDQGSLGLGYSTRDYYLDEKKYEKQM 250

Query: 208 RGYLK 222
           + Y K
Sbjct: 251 KAYRK 255


>Z69902-13|CAA93770.2|  754|Caenorhabditis elegans Hypothetical
           protein ZK20.6 protein.
          Length = 754

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +1

Query: 46  TPVSGKTTRAKELKQFF-----EEKHGKTVEIVSEDEAIAKLGYEKNSMFLDSQK-EKRV 207
           T +   T +++++  FF     E+    +  ++S D+    LGY     +LD +K EK++
Sbjct: 191 TKLLSNTIQSRDVSVFFDFGPAEDSRNVSRRLLSFDQGSLGLGYSTRDYYLDEKKYEKQM 250

Query: 208 RGYLK 222
           + Y K
Sbjct: 251 KAYRK 255


>Z66516-1|CAA91358.3|  251|Caenorhabditis elegans Hypothetical
           protein W03C9.1 protein.
          Length = 251

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = +1

Query: 52  VSGKTTRAKELKQFFEEKHGKTVEIVSEDEAIAKLGYEKNSMFLDSQKEKRVR-GYLKSE 228
           V GK  +AK+L +FF   HGK  ++ +   +   L   + S+  D + E  +   Y  S+
Sbjct: 67  VDGKDKKAKKLSKFFVFNHGKDEDLKTAVGSEPTLDSTQESITEDDEHESPLSDNYKFSD 126

Query: 229 AIRLIGKDNVVILDGSNYIKGYRYELYCASKASKSTQ 339
             +L G   ++      Y++  R  +    +  KS Q
Sbjct: 127 DEKLDGL-QILPSPPPKYVEKLRSRVRQTRRGKKSPQ 162


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical
           protein F26A3.3 protein.
          Length = 1632

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +1

Query: 340 CTIYTLRNHEEAWQANQKRISTDNSDQYTEEVFNALTRLRFEEPNSNNRWDSPLFTVLPT 519
           C +   R +  A Q ++ R S  +  +Y   V N   R   + P +    DSP+FT+   
Sbjct: 248 CPVLIRRAYRTAKQESENRHSVPHYRRYL--VINR-GRSANQYPTAKAITDSPVFTIEFD 304

Query: 520 DNIDLENIYKVL 555
            ++ L  IY++L
Sbjct: 305 QSVGLNEIYRLL 316


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical
           protein T06E4.3b protein.
          Length = 2514

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 494 LSHRLLEFGSSNLNLV-NALKTSSVYWSLLS 405
           LSH L +F   N  +  N ++ S +YWSLLS
Sbjct: 853 LSHVLSDFNFPNQKITFNMIRPSLLYWSLLS 883


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical
           protein T06E4.3a protein.
          Length = 2531

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 494 LSHRLLEFGSSNLNLV-NALKTSSVYWSLLS 405
           LSH L +F   N  +  N ++ S +YWSLLS
Sbjct: 853 LSHVLSDFNFPNQKITFNMIRPSLLYWSLLS 883


>Z68880-9|CAA93099.1|  255|Caenorhabditis elegans Hypothetical
           protein K08F4.9 protein.
          Length = 255

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 615 ELPIRSGQNHSGYLQTDTGSKTVELGPEKSSSQV 716
           E+P+     H G++QTD G    E+  ++S +++
Sbjct: 197 EIPVLITNIHPGWVQTDMGGSNAEISVDESVTKI 230


>Z68879-12|CAA93091.1|  255|Caenorhabditis elegans Hypothetical
           protein K08F4.9 protein.
          Length = 255

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 615 ELPIRSGQNHSGYLQTDTGSKTVELGPEKSSSQV 716
           E+P+     H G++QTD G    E+  ++S +++
Sbjct: 197 EIPVLITNIHPGWVQTDMGGSNAEISVDESVTKI 230


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
           polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +1

Query: 340 CTIYTLRNHEEAWQANQKRISTDNSDQYTEEVFNALTRLRFEEPNSNNRWDSPLFTVLPT 519
           C +   R +  A Q ++ R S  +  +Y   V N   R   + P +    DSP+FT+   
Sbjct: 248 CPVLIRRAYRTAKQESENRHSVPHYRRYL--VINR-GRSANQYPTAKAITDSPVFTIEFD 304

Query: 520 DNIDLENIYKVL 555
            ++ L  IY++L
Sbjct: 305 QSVGLNEIYRLL 316


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
           protein.
          Length = 2514

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 494 LSHRLLEFGSSNLNLV-NALKTSSVYWSLLS 405
           LSH L +F   N  +  N ++ S +YWSLLS
Sbjct: 853 LSHVLSDFNFPNQKITFNMIRPSLLYWSLLS 883


>U88180-5|AAB42299.1|  340|Caenorhabditis elegans Hypothetical
           protein T27A3.6 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +1

Query: 19  KMPLIIICGTPVSGKTTRAKELKQFFEEKHGKTVEIVSEDE 141
           K  ++ + G   SGK+T AKE ++FF    G+T  I+++DE
Sbjct: 5   KAYVLALAGCTNSGKSTLAKEFQRFFGA--GETT-IINQDE 42


>U46673-5|AAM51533.1|   91|Caenorhabditis elegans Hypothetical
           protein C54D1.7 protein.
          Length = 91

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 619 FLYEVDKTTQDICKQILEAKQLNLDRRSQV 708
           FL E+D T  DI  ++LEA+QL  ++ +++
Sbjct: 36  FLTELDPTLSDIVLELLEAQQLPTNKANRM 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,416,320
Number of Sequences: 27780
Number of extensions: 357009
Number of successful extensions: 1135
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)