Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1918
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   4.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   7.5  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 603 WRILSALIGWWRFL 562
           WR  S LIGW  FL
Sbjct: 390 WRHTSVLIGWSAFL 403


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -1

Query: 428 SVYWSLLSVLILFWFACH 375
           ++ W L   L+L W  C+
Sbjct: 171 NIRWELAGTLLLVWILCY 188


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +1

Query: 319 KASKSTQCTIYTLRNHEEAWQANQKRISTDNSDQYTEEV 435
           K  K     IY  +N+E  W  + K     N D    EV
Sbjct: 355 KIIKQISSNIYERQNNEYIWIVSNKYQKIANGDLNFNEV 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,971
Number of Sequences: 438
Number of extensions: 4457
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)