Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1917
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   165   6e-42
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    54   2e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    54   2e-08
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.0  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   6.6  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   8.8  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   8.8  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  165 bits (400), Expect = 6e-42
 Identities = 79/168 (47%), Positives = 106/168 (63%), Gaps = 1/168 (0%)
 Frame = -2

Query: 618 INQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKR-PNTIRS 442
           I QF +TLDK TA  +FK+L KYRPET                         + P  ++ 
Sbjct: 75  IAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKY 134

Query: 441 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKT 262
           G N V  L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT
Sbjct: 135 GLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKT 194

Query: 261 CTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 118
              LA+T V   D+   + +V A+  NF+ +Y+E R+ WGGG++G K+
Sbjct: 195 AAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKT 242


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = -2

Query: 450 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 283
           +R G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 33/100 (33%), Positives = 47/100 (47%)
 Frame = -2

Query: 450 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 271
           I  G   V K V K +  LV++A D+ P++++  +P LC    VPY     K  LG   +
Sbjct: 54  ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113

Query: 270 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 151
            K  T   +  V  G +   SKV E     + E YEE+ K
Sbjct: 114 TKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEIIK 147


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 429  LCLCRIGWC 455
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 447 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 325
           +SG+  +T+ +      +V I + +D +E    LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 316 ILHCQGQVPPRCTCTPQDMHMLSSNKC 236
           +LHC  +   RC C P+++ + S++ C
Sbjct: 333 LLHCPRK--GRCFCKPEEIDLSSNSSC 357


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = -2

Query: 585 TAKGLFKILEKYR 547
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,983
Number of Sequences: 5004
Number of extensions: 30998
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)