Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1917
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 182 2e-46
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 170 8e-43
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 6e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 48 7e-06
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 36 0.018
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.023
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 29 2.7
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 27 8.1
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 182 bits (442), Expect = 2e-46
Identities = 84/168 (50%), Positives = 114/168 (67%)
Frame = -2
Query: 618 INQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSG 439
INQF LD +A+ FK+L+KYRPE+ KRPNT+R G
Sbjct: 81 INQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHG 140
Query: 438 TNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTC 259
NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT
Sbjct: 141 VNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTT 200
Query: 258 TCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSN 115
+AL +V D+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS+
Sbjct: 201 AAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSD 248
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 170 bits (413), Expect = 8e-43
Identities = 83/168 (49%), Positives = 113/168 (67%)
Frame = -2
Query: 618 INQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSG 439
INQF LD +A+ FK+L+KYRPE+ RPNT+R G
Sbjct: 81 INQFRTALDSQSARQAFKLLDKYRPESTEVTK--------------------RPNTVRHG 120
Query: 438 TNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTC 259
NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT
Sbjct: 121 VNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTT 180
Query: 258 TCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSN 115
+AL +V D+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS+
Sbjct: 181 AAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSD 228
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 6e-08
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = -2
Query: 450 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 277
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 276 VHRKTCTCLALTNVESGDRASFSKVVEAIK 187
V R N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = -2
Query: 453 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 274
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG V
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 273 HRKTCTCLALTNVESGDRASFSKVVEAIK 187
+ + L + + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -2
Query: 618 INQFTQTLDKTTAKGLFKILEKYRPET 538
INQF LD +A+ FK+L+KYRPE+
Sbjct: 184 INQFRTALDSHSARQAFKLLDKYRPES 210
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = +1
Query: 496 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 615
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 107 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 256
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 107 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 256
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 107 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 256
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 107 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 256
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 107 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 256
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 188 LMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPI 328
L+ T E +S D F V V TS+P +D P T+Q+ P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,539,158
Number of Sequences: 27780
Number of extensions: 190904
Number of successful extensions: 562
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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