Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1916
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    30   0.40 
SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces...    30   0.40 
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    28   1.6  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    27   3.7  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         26   4.9  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   6.4  
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc...    26   6.4  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.4  

>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 425 SWKVSCDRWGASSFNESMFSSGACLSFLKVTTKGISSTERVKLRGRPNVIVRN 583
           S K  CD  G+++   +  ++G C S+L  +  G S+T  + L    N + RN
Sbjct: 434 SAKGDCDFSGSATLVSASSATGTCASYL--SAAGSSATNAISLTADSNAVSRN 484


>SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 155

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 510 FKKLKQAPLENIDSLKLLAPHLSHETFQEFRLQLYQITSESVEQFR 373
           ++K  Q PLEN+D++K+ + +      Q F   L  +  ++V +FR
Sbjct: 4   YQKATQNPLENVDNVKIESENAIPSNLQAFTKSL-AVLDDNVSEFR 48


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
 Frame = -3

Query: 525 PFVVTFKKLKQAPLENIDSLKLLAPHLSHETFQEFRLQLYQITSES--VEQFRSA*RTNE 352
           P +VTF K  QA       L L  PH +++ F  +    ++       +++ +     N 
Sbjct: 326 PDMVTFSKKFQAAGIFYHDLAL-RPH-AYQHFNTWMGDPFRAVQSRYILQEIQDKDLLNN 383

Query: 351 QRRVGQNLYSRVLELTPQGECRLNNASLIGQVTPATWQCDN 229
            + VG  LY+ + EL  +   ++NN    G+ T   W C++
Sbjct: 384 VKSVGDFLYAGLEELARKHPGKINNLRGKGKGTFIAWDCES 424


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 620 VRFRHLSNFVLCRIYLMMTLFSFSPPYLTRW 712
           ++F  +S  VLC  Y   TL+ ++P +   W
Sbjct: 334 LKFTIMSYNVLCERYATSTLYGYTPSWALSW 364


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 380 CSTDSDVIWYNCSRNSWKVSCDRWGASSF 466
           C T+  V W       W +    WG++SF
Sbjct: 288 CQTEKGVRWLGKRLGEWLLDITGWGSASF 316


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 687 KEKRVIIRYILHKTKFDRCLNLTNNNFKISSHKYKFRTITFGLPR 553
           K+K  I+  I +    +R + L NN F+ +S   +     F  PR
Sbjct: 134 KDKNAILFIIANSKGIERVITLINNKFRTTSKYNQIINNIFAHPR 178


>SPAC24B11.08c |||COPII-coated vesicle component
           Erv46|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 198 GDMIILLVGRLLVYSLYARWLNRESLIYVH 109
           G +I L+ G ++++ +   W+N   +I VH
Sbjct: 27  GGLITLVSGLIVIFIVLMEWINYRRVIAVH 56


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = -3

Query: 525 PFVVTFKKLKQ-----APLENIDSLKLLAPHL 445
           P V+ F +LK+     A L   DSLKLL+P L
Sbjct: 79  PLVMEFSQLKEDLTNRASLNGYDSLKLLSPFL 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,225
Number of Sequences: 5004
Number of extensions: 58267
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)