Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1916
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687...    28   6.7  
01_03_0232 + 14030821-14030904,14031029-14031374,14031475-140315...    28   6.7  
10_08_0506 + 18390892-18391373,18392699-18392798,18393152-183934...    28   8.9  
09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174...    28   8.9  
03_02_0292 + 7151885-7152613                                           28   8.9  

>06_01_1193 +
           10264360-10264504,10264763-10264910,10268350-10268748,
           10268925-10271214
          Length = 993

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 636 RCLNLTNNNFKISSHKYKFRTITFGLPRNFTRSV 535
           RC  ++NNN    +H  K  T T  LP  FT SV
Sbjct: 658 RCTRVSNNNNFSINHPVKCLTNTMCLPNIFTPSV 691


>01_03_0232 +
           14030821-14030904,14031029-14031374,14031475-14031599,
           14031927-14032023,14032459-14032691,14032765-14032885,
           14033319-14033374,14033630-14033703,14034193-14034239,
           14034458-14034507,14034860-14034922,14035160-14035240,
           14035517-14035627,14035714-14035789,14036216-14036358,
           14036775-14036848,14037304-14037409,14037492-14037547,
           14038272-14038378,14041150-14041598
          Length = 832

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 153 GNKLIIVQRVILSCRPASLDGAVRFNCHIAKSLA*LDQSVMRC 281
           G+K  +++R++  C P+  DG V+    IAK  A  D  V  C
Sbjct: 112 GSKKEVIERLL--CAPSDTDGGVQDKKKIAKGFADGDDRVEEC 152


>10_08_0506 +
           18390892-18391373,18392699-18392798,18393152-18393485,
           18393756-18393868,18394437-18394565,18394746-18394839,
           18394942-18395025,18395265-18395896,18396662-18396951,
           18397098-18397242,18397876-18397973,18398075-18398156,
           18398607-18398612,18398845-18398928
          Length = 890

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 474 DSLKLLAPHLSHETFQEFRLQLYQITSES 388
           +SLK+L P L     + F LQL  IT E+
Sbjct: 848 NSLKILVPALEKFVIESFHLQLNMITEET 876


>09_01_0112 +
           1737438-1737777,1738441-1738511,1738974-1739052,
           1741559-1741641,1741733-1741784,1742038-1742105,
           1742279-1742345,1742426-1742505,1742576-1742640,
           1742785-1742847,1743271-1743427,1743511-1743588,
           1743677-1744219,1744321-1744497,1744534-1744788,
           1745270-1745329,1745874-1745888,1746123-1746135,
           1746819-1746934
          Length = 793

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = -2

Query: 637 QMPESN*QQFQDKFA*VQVSYNNIRSATQFHPLRG*YSLCRYLQKTQAGSARKHRLVETT 458
           QMP    Q    + A +Q SY + + A   + L+    L +  Q++     +  ++ E  
Sbjct: 525 QMPSQAPQLLLQQQAALQSSYQSSQQA--IYQLQQQLQLMQQQQQSNLNHQQPTQVAEQ- 581

Query: 457 RAPPVARDLPGVPTAIVPNYI 395
              PV    PG P AI+P+ I
Sbjct: 582 HGQPVQSSNPGAPNAIIPSNI 602


>03_02_0292 + 7151885-7152613
          Length = 242

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 475 RLVETTRAPPVARDLPGVPTAIVPNYIRI 389
           +L   T+APP+  +LPG   + VP  +++
Sbjct: 164 QLFPPTQAPPIGENLPGPARSAVPELLKL 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,042,777
Number of Sequences: 37544
Number of extensions: 371851
Number of successful extensions: 884
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)