Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1911
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    25   5.0  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   6.6  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   8.7  

>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = -3

Query: 43  IHGMRWSGPILT 8
           +HGM++SGPIL+
Sbjct: 285 VHGMKYSGPILS 296


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 314 EHNDLXYARHRFFMVGGWFTGDYQCSEE 397
           E N+L  + +  F+   WF+GDYQ S E
Sbjct: 248 EENNLNTSYYCKFL-NSWFSGDYQQSVE 274


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 190 LILPARTQDCVSQYKSKTVVLNYSDPAL 107
           +++PA T+    Q+ +KT  L Y DP L
Sbjct: 295 VLIPAYTESARWQFPTKTGYLVYWDPEL 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,735,055
Number of Sequences: 5004
Number of extensions: 29416
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)