Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1910
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961...    27   7.8  
06_01_0113 + 886899-886906,887029-887107,887390-887458,887547-88...    27   7.8  
01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,432...    27   7.8  

>11_03_0072 +
           9605273-9606814,9616982-9617016,9617271-9617348,
           9617427-9617501,9617583-9617657,9617731-9617977,
           9618070-9618313,9618852-9619309,9619388-9619675,
           9619751-9619788,9619882-9620452
          Length = 1216

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 288 LKYSATNELKPPTCGKKTKTDLQVPR*YSRYTVSNGLGI 172
           L+Y+  N L P   G++ KT+      Y+ Y VS G GI
Sbjct: 624 LEYADANILAP-ALGQRFKTERDAFNFYNVYAVSKGFGI 661


>06_01_0113 +
           886899-886906,887029-887107,887390-887458,887547-887636,
           887725-887863,888466-888568,888664-888716,888801-888867,
           889147-889255,889499-889567,889676-889745,889833-889952,
           890052-890201,890611-890873
          Length = 462

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = -3

Query: 372 PPGVK*LLEPIDTYNINAPPTLRYKF*GLKYSATNELKPPTCGKKTKTDLQVPR*YSRYT 193
           P  V+ L  P        PP+LR++     Y+AT    PP+ G K   D +  R YS   
Sbjct: 250 PTAVEVLQHPFFQPCFYIPPSLRFRSTN-GYAAT----PPSVGAKGAVDQKNARRYSVGP 304

Query: 192 VSNG 181
           +SNG
Sbjct: 305 LSNG 308


>01_01_0585 -
           4328725-4329030,4329333-4329551,4329752-4329820,
           4329925-4331469,4332220-4332429,4332563-4332713,
           4332791-4333031,4333898-4333956,4334379-4334653,
           4334813-4334955,4335034-4335088,4335181-4335258,
           4335351-4335478,4335533-4335575
          Length = 1173

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 285 KYSATNELKPPTC--GKKTKTDLQVPR*YSRYTVSNGLGIL 169
           KY+A  ELKPPT    + +    Q+     R+ V+NG G++
Sbjct: 248 KYAAGGELKPPTTAYSRGSGKHPQLMPSTPRWAVANGAGVI 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,402,170
Number of Sequences: 37544
Number of extensions: 247896
Number of successful extensions: 386
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)