Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1910
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF068709-1|AAQ91906.1|  449|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    27   9.2  

>AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical
           protein C24B9.3a protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 282 T*DLRTYISRWVAHLCC 332
           T D  TY+S W+A LCC
Sbjct: 203 TSDQLTYVSAWMAALCC 219


>AF068709-1|AAQ91906.1|  449|Caenorhabditis elegans Hypothetical
           protein C24B9.3b protein.
          Length = 449

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 282 T*DLRTYISRWVAHLCC 332
           T D  TY+S W+A LCC
Sbjct: 223 TSDQLTYVSAWMAALCC 239


>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 336 TYNINAPPTLRYKF*GLKYSATNELKPP 253
           T  IN PP+   K+  L+YS T E+  P
Sbjct: 112 TLPINVPPSFEGKYGYLRYSVTAEIDRP 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,315,954
Number of Sequences: 27780
Number of extensions: 205469
Number of successful extensions: 294
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)