Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1907
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 195 7e-51
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 110 2e-25
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 108 8e-25
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 105 9e-24
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 29 0.75
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.99
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 3.0
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 26 5.3
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 26 7.0
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 25 9.2
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 9.2
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 25 9.2
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 195 bits (475), Expect = 7e-51
Identities = 82/109 (75%), Positives = 95/109 (87%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 243 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTGG 389
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYT G
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEG 109
Score = 145 bits (351), Expect = 7e-36
Identities = 71/113 (62%), Positives = 80/113 (70%)
Frame = +1
Query: 385 EGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTY 564
EGAEL D+VLDVVR+EAE+CD LQGFQ KIREEYPDR+M T+
Sbjct: 108 EGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATF 167
Query: 565 SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLNYPHP 723
SV P+PK SDTVVEPYNATLS+HQLVEN+DET+CIDNEAL I TL P
Sbjct: 168 SVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSP 220
Score = 33.5 bits (73), Expect = 0.035
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 708 KLSTPTYGDLNHLVSLTMSGV 770
K+ +P+Y DLNHLVS M+GV
Sbjct: 216 KIKSPSYDDLNHLVSAVMAGV 236
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 110 bits (265), Expect = 2e-25
Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 236
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 237 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTGG 389
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVG 111
Score = 85.8 bits (203), Expect = 6e-18
Identities = 42/112 (37%), Positives = 61/112 (54%)
Frame = +1
Query: 388 GAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYS 567
G ELVD V D +R+ A++C LQGF ++ EY + +S
Sbjct: 111 GKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFS 170
Query: 568 VVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLNYPHP 723
V P+P+VS +VVEPYN+ L+ H ++ D T+ +DNE+ YDIC R L+ P
Sbjct: 171 VYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERP 222
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 108 bits (260), Expect = 8e-25
Identities = 45/106 (42%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +3
Query: 66 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 245
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 246 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGH 377
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGY 108
Score = 70.1 bits (164), Expect = 3e-13
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Frame = +1
Query: 397 LVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP 576
+ + ++D++ +EA+ D L+GF ++ + YP +I+ TYSV P
Sbjct: 114 IFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFP 173
Query: 577 -SPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLNYPHP 723
S VSD VV+PYN+ L++ +L N D +DN AL I L+ +P
Sbjct: 174 NSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNP 223
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 105 bits (251), Expect = 9e-24
Identities = 48/115 (41%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 224
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 225 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTGG 389
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVG 115
Score = 91.5 bits (217), Expect = 1e-19
Identities = 43/112 (38%), Positives = 65/112 (58%)
Frame = +1
Query: 388 GAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYS 567
G E++DSVL+ +R+ A++C LQGF ++ EY + +S
Sbjct: 115 GKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFS 174
Query: 568 VVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLNYPHP 723
V P+P+VS +VVEPYN+ L+ H ++N+D T+ +DNEA YDIC R L+ P
Sbjct: 175 VYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERP 226
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 29.1 bits (62), Expect = 0.75
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 476 ECVSWNPWRQSHDSASFRTTSKTESTSSAPSRVV-SLGPVVTGAGLSEDEVVR 321
+C+ +RQSH+ A+ + + + PS+ V SL +VT L ++++R
Sbjct: 138 QCMYERKYRQSHEKATLADLEQFSNPITRPSKEVDSLENIVTKLDLESEDLMR 190
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 28.7 bits (61), Expect = 0.99
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 591 GHSSRTVQRHTFSSSIS*KHRRNLLYRQRGSLRYLLPHAKLSTP 722
G+ RT +R F S ++R +LL R SLR L P A +TP
Sbjct: 70 GNRDRTTERSAFRS----RYRGSLLNRNSPSLRSLSPPATPATP 109
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 102 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 203
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 297 GPFGQIFRPDNFVFGQSGAG-NNWA 368
GP+G +F P F+F +G NW+
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWS 181
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 7.0
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -1
Query: 455 WRQSHDSASFRTTSKTESTSSAPSRVVSLGP-VVTGAGLSEDEVVRTEDLSERSRADRVH 279
W++S A + K E + +V + + G+S E+ R +D S+ R +RVH
Sbjct: 205 WKES--KAKQEASKKEEHKLNTKPQVTAKDQNAMPSTGISGFEINRQKDTSDMKRNNRVH 262
Query: 278 GAGLQVDEDG 249
DEDG
Sbjct: 263 ----MDDEDG 268
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = -1
Query: 215 VVYIDALQLQVRVPMVSTGGVDAVLVGDDLPELSSDLVAALTSLDM 78
++Y+DA L +++ + G A V DLP L +D V++L S+ +
Sbjct: 511 ILYVDAKTLFIQLLRLLPSGHPATRVPLDLP-LIADSVSSLKSMSL 555
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 355 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 260
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/81 (18%), Positives = 34/81 (41%)
Frame = -1
Query: 620 VALYGSTTVSDTLGDGTTEYVFIILSGYSSLILEMRRXXXXXXXXXPSECVSWNPWRQSH 441
+A+ + + D + EY+ ++ GY + E RR + +S+ + +
Sbjct: 243 LAIDAFSALRDLSANRFPEYLLLVAGGYDIRVSENRRYLKELQEFCEQKDLSYTTVKDNW 302
Query: 440 DSASFRTTSKTESTSSAPSRV 378
D+ + ++ S PS+V
Sbjct: 303 DNITVAPSTNVLFLLSVPSKV 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,353
Number of Sequences: 5004
Number of extensions: 58514
Number of successful extensions: 190
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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