Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1906
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   2.0  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   3.5  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   4.6  
SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   4.6  
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa...    25   6.1  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   6.1  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   6.1  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 45  RFLIKKELSKSIHPVKSYEVKNIQSN*KPHPFLKS--VKGTTINYRWPISRK 194
           RF+   ++   IH   + +V +I +  KP+P +    +  T+++   PI  K
Sbjct: 162 RFIKDNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIEIPIKPK 213


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 129  PHPFLKSVKGTTINYRWPISRK 194
            P PF   ++ TTI Y W I +K
Sbjct: 1015 PLPFKDEMQSTTIEYIWKIPQK 1036


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 290 QNLFYEIYVFEQSS*YFVIGDSWNISISDNRLLTAKKKK 406
           Q   +E+ VF     +  I   WN+S+S+  LLT + KK
Sbjct: 685 QTPLFEMRVFHDR--FEKIPTGWNMSVSNLPLLTERDKK 721


>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 129 PHPFLKSVKGTTINYRWPISRK 194
           P P L+SV  T +   W IS K
Sbjct: 103 PEPVLRSVHNTLLKMGWSISEK 124


>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 191

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 75  SIHPVKSYEVKNIQ---SN*KPHPFLKSVKGTTINY 173
           S HP+    + N Q      K HP+++S+  T INY
Sbjct: 153 SSHPLWLESLNNAQRLCDTYKDHPWVQSISPTLINY 188


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 90  KSYEVKNIQSN*KPHPFLKSVKGTTI 167
           K  +  ++ S+ KPHPF+ SV    I
Sbjct: 828 KDTDTNSVTSDPKPHPFVPSVSENKI 853


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 320 RRRRFHRINFEKCLVKSIYLASIKKHSSETY 228
           R+R   R+N EKCL+  +  A +K    E +
Sbjct: 178 RQRGNGRVNIEKCLIAWMAAAHLKPKDHELW 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,701,172
Number of Sequences: 5004
Number of extensions: 33165
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)