Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1906
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr...    27   4.0  
AF067613-14|ABA54416.1|  395|Caenorhabditis elegans Hypothetical...    27   5.3  
U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical protein
            R03G5.3 protein.
          Length = 1311

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 278  PNIFQNLFYEIYVFEQSS*YFVIGDSWNISISDNRLLTAKKKKK 409
            P    NL YE Y    S   FV+ + WN+S+ +  +   +K  +
Sbjct: 1126 PFYLTNLNYEKYALLVSCMVFVVSNVWNLSVMETLVTHIRKSSR 1169


>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical protein
            F33H1.4 protein.
          Length = 1385

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 350  RLSQNTTNFVRRRRFHRINFEKCLVKSIYLASIKKHSSETYQMILYLQNDKL 195
            R     T+ +   RF + NF++   K   +  IKK++   Y  IL ++N+K+
Sbjct: 1184 RFGDTITDPIELERFRKDNFDQQFDKVQIVFGIKKNNEPAY--ILLMENEKM 1233


>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical protein
            C28G1.4 protein.
          Length = 1081

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 161  DDKLQMAYFTEITYHFVDIISSDKSLRNVF*SMPNRSISPNIFQNLFYEIYVFEQSS 331
            DD  ++  F E  +H +D ++    +RN+  +M N  I P++  N     Y   Q S
Sbjct: 966  DDTKEVVGFHETKHHNIDHLTLANVVRNISCNMRNGFIQPSLNGNQTPTSYKIAQRS 1022


>AF067613-14|ABA54416.1|  395|Caenorhabditis elegans Hypothetical
           protein F56D6.15 protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 221 SSDKSLRNVF*SMPNRSISPNIFQNLFYEIYVFEQSS*YFVIGDSWN 361
           S+DK +R        + ++ N  +N FY    F QS+ YF IG S N
Sbjct: 22  SNDKEIRGFCFKFVVQKMTYNDARNWFYARSAFGQSAEYFWIGLSRN 68


>U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical
           protein F53B3.5 protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 407 FFFFLPLKACCR-IWICSSY 351
           F F LP K CCR +++C ++
Sbjct: 315 FLFHLPTKNCCRFVYVCIAF 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,217,204
Number of Sequences: 27780
Number of extensions: 175623
Number of successful extensions: 392
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)