Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1906
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.44 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   9.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   9.5  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 66  LSKSIHPVKSYEVKNIQSN*KPH 134
           LS  + P+K  + +N+QS  +PH
Sbjct: 292 LSNGLGPIKDIDYENVQSLYQPH 314


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 347 LSQNTTNFVRRRRFHRINFEKCLVKSIYLASIKKHSSETYQ 225
           L  +  + +RR+R    N +  LV     A  +KH++  YQ
Sbjct: 325 LGADDPDSLRRKRQKINNSQNALVLRHVQAEAEKHAAMLYQ 365


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 164 DKLQMAYFTEITYHFVDIISSDKS 235
           DK ++   +EI    VD+I +DK+
Sbjct: 568 DKDRVLVISEIQMVIVDVIPTDKN 591


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 380 CCRIWICSSYRLSQNTTN 327
           CC IWI S+ +  +  +N
Sbjct: 76  CCVIWIFSTSKSLRTPSN 93


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 380 CCRIWICSSYRLSQNTTN 327
           CC IWI S+ +  +  +N
Sbjct: 76  CCVIWIFSTSKSLRTPSN 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,992
Number of Sequences: 438
Number of extensions: 2075
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)