Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1905
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 34 0.027
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 33 0.047
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.76
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 1.3
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 27 3.1
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 3.1
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 27 3.1
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 4.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.0
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 4.0
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 5.4
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 5.4
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 26 5.4
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 7.1
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 9.4
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 25 9.4
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 9.4
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 9.4
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 25 9.4
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 9.4
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 9.4
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 9.4
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 9.4
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 33.9 bits (74), Expect = 0.027
Identities = 30/123 (24%), Positives = 53/123 (43%)
Frame = +3
Query: 33 SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 212
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 213 TEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 392
+KS+ D + +S + T T NP +++ + N L + + H
Sbjct: 82 NITNKKSVTDNLLLSLTSSNQSTNT-NLNPSSRVEIINLNSSPPNSLSSQPKHQEFHLFH 140
Query: 393 TTT 401
T T
Sbjct: 141 TPT 143
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 33.1 bits (72), Expect = 0.047
Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 1/94 (1%)
Frame = +2
Query: 266 PAEAHRDSGEEPASGQRRCRSGES-PPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRS 442
P H + GE GE PP P+ H + + P +
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 333
Query: 443 GEGKEQIPERHRELRSH*AEAHGDVRKEPAPHKG 544
GE P +H EL H H ++ HKG
Sbjct: 334 GEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 29.1 bits (62), Expect = 0.76
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 221 DPEVF-IRRYREV*FEPAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHD 397
DPE++ +RR P + D+ ++ + R G R RT+R DEA
Sbjct: 55 DPELYGLRRSGRTRSNPGR-YVDTDDQEDVFPSKHRKGTRNGSSFSRHRTIRDLDDEAES 113
Query: 398 DGRKESTAPDRSY 436
+ES + D SY
Sbjct: 114 VTSEESESDDSSY 126
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +3
Query: 99 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 257
L K +TDL +Q E FN C + D + +V A E V E+ + DG+E
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487
Query: 258 DSSQ 269
SSQ
Sbjct: 488 SSSQ 491
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 737 IRGCCTSPLPRQGCHCTK 684
+R C +SP PRQG C K
Sbjct: 70 VRDCPSSPNPRQGAECYK 87
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +3
Query: 201 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKT 380
EDV E+ + + E D + ++ E + +N P+ + + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307
Query: 381 QM 386
+
Sbjct: 308 NL 309
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 27.1 bits (57), Expect = 3.1
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +2
Query: 434 YRSGEGKEQIPERHRELR---SH*AEAHGDVRKEPAPHKGRH*AREISLNHYFITVTRKC 604
Y+ + IPE +E+ S E++ D K HKG + +E+++ Y+ VTRK
Sbjct: 178 YKVFRYRNGIPEGPQEIIPSISFPLESNMDWMKGIDFHKGCYLGQELTVRTYYTGVTRKR 237
Query: 605 I-SLVSPYFNIDVSQ-IDLRRPLQVL 676
I + P + + SQ I+ PL ++
Sbjct: 238 IFPFIIPNYEDNPSQVIEPSAPLSIV 263
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 217 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 86
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +2
Query: 356 RSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 481
R+ + ++HD G S + DR + K++ +HRE
Sbjct: 710 RTERKKDTQKQSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 4.0
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +3
Query: 84 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----E 251
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD + +
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEK 66
Query: 252 KFDSSQLKHTETQEK 296
KF +S + +T EK
Sbjct: 67 KFHTSLNRFGKTLEK 81
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 224 GLLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQ 120
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 5.4
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +3
Query: 168 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 347
D EK V S + E+ QK++ D E+ D + T T K+ + EK HQ
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187
Query: 348 LLDGVEHFDKT 380
++GV++ KT
Sbjct: 188 AVEGVQNSKKT 198
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +2
Query: 566 SLNHYFITVTRKCISLVSPYFNIDVSQIDLRRPLQVLFLFLYNGNPAWAMATYSNPGFYS 745
+LN Y I+ + SP I +I PL + +GNP + + PG YS
Sbjct: 218 NLNRYDISPAAFILKSGSPSLQIHSVEIPWVEPLALADCIQKSGNPICFLDSAKKPGRYS 277
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 183 IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 311
+ L S ED+ + T+ S+ + + +++HT + K +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +2
Query: 425 DRSYRSGEGKEQIPERHRELRSH*AE----AHGDVRKEPAPHKG 544
D S R G +IP+RHR+ R + G R++P H G
Sbjct: 2 DLSSRLSSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYG 45
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 324 RQRLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQ 214
+QR+ PE S PE+ + +N ++ + TS + Q
Sbjct: 235 QQRINPETSSVPETPVGVSAANVSNESTELATSATQQ 271
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 189 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTE 284
LP +ED+ + SL D + D+SQL E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 225 QKSLFDGIEKFDSSQLKHTETQEKNPLPD 311
Q + G + DSS +K T +E PLP+
Sbjct: 3 QTAALHGPKPMDSSHIKVTNVKELKPLPE 31
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 229 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 131
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,875
Number of Sequences: 5004
Number of extensions: 63018
Number of successful extensions: 250
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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