Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1904
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    28   1.6  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   6.3  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    26   6.3  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.4  

>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 346 VFEIELICAIIWYHQYFSH 290
           V++I  +C + W+H  FSH
Sbjct: 151 VYDIYTLCLVSWHHHVFSH 169


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 620 LTLVISVVQNQVSNLFGYFLIEIEDRAERGSYSSA 724
           LT  +   ++ + N+F Y ++ ++ RA R S SSA
Sbjct: 87  LTNKLGFQKDNMRNIFDYVMVLLDSRASRMSPSSA 121


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 397 VLKAISSFRIKSVQFPKVFEIELICAIIWYHQY 299
           VL++ISS  IK    PK F I+L     WY ++
Sbjct: 210 VLESISS-PIKDNVLPKKFNIDLELTTFWYGRF 241


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 121 LTCDIFNINHLCNIYFLFFT 180
           L+  +F+I+HL + +FLFF+
Sbjct: 166 LSHSLFHISHLISFHFLFFS 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,298
Number of Sequences: 5004
Number of extensions: 42253
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)