Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1901
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    30   0.29 
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    29   0.88 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   3.5  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    26   4.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   8.2  

>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = +1

Query: 148 FNKENGYEIFITDFIYLWHVYFTEITFLTQLKESNDGIEFENDSQLLQDGIKLLVQPENL 327
           F K + + +F+   + L   YF + T LT+ KESN  + F N+   +  G+  +  P   
Sbjct: 40  FTKTHLHRLFVFVVLLLCSGYFLKHTLLTRPKESNVVMIFVNN---IGGGVLDVKSPRQW 96

Query: 328 KKVNVFEENEKR 363
           +   +  EN+K+
Sbjct: 97  ELEKISTENKKK 108


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = +1

Query: 238 LKESNDGIEFENDSQLLQDGIKLLVQPENLKKVNVFEENEKRNLSITL 381
           LKE+ D ++F+  S++LQD ++L      L K N FE+   +NLS  L
Sbjct: 135 LKETLDNVDFDARSKILQD-LRLEYAEILLTKFN-FEKKGYQNLSSAL 180


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 211 FTEITFLTQLKESNDGIEFENDS 279
           FT +TF   + + +D +EF+ DS
Sbjct: 174 FTNLTFPEPISDDSDSVEFQRDS 196


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 412 KCRLSRVSDEMMFQKITQNL-LKIINDLW---MSQTILRNTLNKKDKELTAYKTKFGEIQ 579
           KC L+R+ DE+   ++T +L  K I  +W    S T  R  L + +K+    K  +  I+
Sbjct: 135 KCFLARLEDEVFQGRLTSSLEKKEIGIVWSKSFSTTAGRANLKRNNKDAPLGKKTYAYIE 194

Query: 580 HKHK 591
              K
Sbjct: 195 LSDK 198


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 493  WMSQTILRNTLNKKDKELTAYKTKFGEIQHKHKKTE 600
            W S+ + R+    KD+  T YK K GE  H H   E
Sbjct: 1832 WFSKLLRRD--ESKDQP-TVYKAKLGEKSHLHYDKE 1864


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,623
Number of Sequences: 5004
Number of extensions: 63412
Number of successful extensions: 209
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)