Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1901
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0564 - 4136114-4136566,4136977-4137047,4137197-4137275,413...    29   3.7  
08_02_0534 + 18285477-18285689,18286189-18286348,18287924-182881...    29   4.9  

>02_01_0564 -
           4136114-4136566,4136977-4137047,4137197-4137275,
           4137380-4137535,4137867-4137938,4138081-4138161,
           4138237-4138302,4138482-4138547,4138648-4138698,
           4138982-4139109,4139239-4139377,4139606-4139643,
           4139679-4139748,4140194-4140277
          Length = 517

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 484 NDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFSDELHMNTHNMY-ETHFGE 660
           ND + + +      N +   L   + ++ + QH+ +  +P   + H + HNMY +TH+ +
Sbjct: 409 NDPFATSSSFLPPSNVQFAMLNQQQHQYYQSQHQQQYYQPHHFQDHQHHHNMYFQTHYQQ 468

Query: 661 SAIPQ 675
           + I Q
Sbjct: 469 NQIYQ 473


>08_02_0534 +
           18285477-18285689,18286189-18286348,18287924-18288124,
           18288216-18288280,18288465-18288492,18288568-18288629,
           18288885-18288971,18289310-18289360,18289663-18289884,
           18291148-18291241,18291349-18291489,18291587-18291672
          Length = 469

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +1

Query: 460 TQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFSDELHMNTHNM 639
           T+  LK I + W  +TI++    K+ ++ T+ + ++  +     K  P SDE     HN+
Sbjct: 195 TKAFLKGI-ETWKKETIIKREAEKRSEQ-TSEELEYRPVPASESK--PPSDEAVSILHNV 250

Query: 640 YETHFG 657
           Y   FG
Sbjct: 251 YWKEFG 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,193,588
Number of Sequences: 37544
Number of extensions: 325182
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)