Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1901
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46828-8|CAE17900.1|  166|Caenorhabditis elegans Hypothetical pr...    32   0.36 
AL023832-3|CAE17976.1|  166|Caenorhabditis elegans Hypothetical ...    32   0.36 
U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like pr...    32   0.47 
Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical p...    29   3.3  
AF016438-3|AAQ62456.1|  173|Caenorhabditis elegans Hypothetical ...    29   3.3  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    29   4.4  
AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical ...    28   5.8  
U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily ass...    28   7.7  

>Z46828-8|CAE17900.1|  166|Caenorhabditis elegans Hypothetical
           protein Y19D2B.2 protein.
          Length = 166

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
 Frame = +1

Query: 361 RNLSITLVMSCGFPF-KLKCRLSR--VSDEMMFQKITQNLLKIINDLWMSQTILRNTLNK 531
           R   +  + +C FP+ K+  +L +  +S++   Q  + + +  ++   +  ++ R  L +
Sbjct: 48  RTTKMFKIFACVFPYSKIPAKLQKDDISNQGFLQDQSNSSICELSYHHVD-SVSRKCLQE 106

Query: 532 KDKELTAYKTKFGEI---QHKHKKTEPFSDELHMNTHNMYETHFGE 660
           + ++L   K    EI   QHK K  E   D+    T N Y+ HF +
Sbjct: 107 RIQKLEQEKAALIEIMISQHKSKYEEKLKDKKEKRTSNYYKKHFNK 152


>AL023832-3|CAE17976.1|  166|Caenorhabditis elegans Hypothetical
           protein Y19D2B.2 protein.
          Length = 166

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
 Frame = +1

Query: 361 RNLSITLVMSCGFPF-KLKCRLSR--VSDEMMFQKITQNLLKIINDLWMSQTILRNTLNK 531
           R   +  + +C FP+ K+  +L +  +S++   Q  + + +  ++   +  ++ R  L +
Sbjct: 48  RTTKMFKIFACVFPYSKIPAKLQKDDISNQGFLQDQSNSSICELSYHHVD-SVSRKCLQE 106

Query: 532 KDKELTAYKTKFGEI---QHKHKKTEPFSDELHMNTHNMYETHFGE 660
           + ++L   K    EI   QHK K  E   D+    T N Y+ HF +
Sbjct: 107 RIQKLEQEKAALIEIMISQHKSKYEEKLKDKKEKRTSNYYKKHFNK 152


>U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like
           protein protein 8 protein.
          Length = 594

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 21/100 (21%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
 Frame = +1

Query: 412 KCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKHK 591
           K  ++R+ D +  +K  +N L+   ++   +   +  +  +D+E+ A++     +  +H+
Sbjct: 378 KEEVNRIKDSLRLEKSKRNELE--EEVLRQRRCAQEEIESRDQEIEAFRKML--VTLRHE 433

Query: 592 KTEPFSDELHMNTHNMYETHFGESAIPQ-*YFTEDNSIAP 708
           K E   +   ++ HN    H  ESA  +   F++D++  P
Sbjct: 434 KMERSQNPRKISRHNRSSAHDEESARRRSRTFSQDDTAVP 473


>Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical
           protein Y49E10.23b protein.
          Length = 743

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 463 QNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKHKKT--EPFSDELHMN 627
           + LL+ I +  +++ +L+N  N+  KEL A   +  E++ + K T     + E H N
Sbjct: 69  EKLLRTIRERDLNEELLKNVQNQHKKELDAQVRRIRELEVQLKTTTDRGLAQEAHFN 125


>Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical
           protein Y49E10.23a protein.
          Length = 734

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 463 QNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKHKKT--EPFSDELHMN 627
           + LL+ I +  +++ +L+N  N+  KEL A   +  E++ + K T     + E H N
Sbjct: 69  EKLLRTIRERDLNEELLKNVQNQHKKELDAQVRRIRELEVQLKTTTDRGLAQEAHFN 125


>AF016438-3|AAQ62456.1|  173|Caenorhabditis elegans Hypothetical
           protein F44C8.9b protein.
          Length = 173

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 569 PNFVLYAVSSLSFLFKVFLNIV*LIHRSLIIFSRF*VIFWN 447
           P F++      +  FK  +++  L+H++  IF    VIFW+
Sbjct: 114 PEFIISFEPEKASPFKTVIDVTDLVHKAAEIFQEVKVIFWH 154


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +1

Query: 418  RLSRVSDEMMFQKITQNLLKIINDLWMS---QTILRNTLNKKDKELTAYKTKFGEIQH 582
            R +R   EM  +++   L K+  D+       T+L++ +++KD+E+ A K    +IQH
Sbjct: 1130 RNARNKAEMTRREVVAQLEKVKGDVLDKVDEATMLQDLMSRKDEEVNATKRAIEQIQH 1187


>AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.11 protein.
          Length = 788

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
 Frame = +1

Query: 196 LWHVYFTEITF-LTQLKESNDGIEFENDSQLLQDGIKLLVQPENLKKVNVFEENEK-RNL 369
           +W+     IT    +LK S+       D ++ Q+  ++ +Q  N K  +  E  E+  + 
Sbjct: 190 MWNERLENITADFERLKSSSKPSGIRADQKMFQEN-EMKIQELNRKLKDALEAIEEIEDA 248

Query: 370 SITLVMSCGFPFKLKCRLSRVSDEMMFQK--ITQNLLKIINDLWMSQTILRNTLNKKDKE 543
           +  L +        KC++    +E+ F K  +       + D    +  + N LNK+  E
Sbjct: 249 NSALRVDLERRGVEKCKME---EELNFHKGFLIAEQQSFLLDCANFENQIAN-LNKEMTE 304

Query: 544 LT----AYKTKFGEIQHKH-KKTEPFSDELHMNTHNM 639
           L     AYK + GEI  KH ++T  FS+E     H M
Sbjct: 305 LEELRDAYKQQIGEITEKHAQQTMTFSNEKAKFCHAM 341


>U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 197 protein.
          Length = 667

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 451 QKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHK 585
           QK+   L + ++D+ +SQT+++ T+N  D     +     E+ HK
Sbjct: 130 QKVRVELSQFVDDIAVSQTMMK-TINDTDANDRGFLEALHELHHK 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,519,486
Number of Sequences: 27780
Number of extensions: 353104
Number of successful extensions: 1061
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)