Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1901
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.9  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   3.8  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   3.8  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   3.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   3.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   3.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   3.8  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   3.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.8  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   8.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 624 HVKFITEWFSFFVFVLNF 571
           H   I EW SFF+ +  +
Sbjct: 403 HFAAIIEWLSFFIVIFTY 420


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = +1

Query: 409 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKH 588
           LK R    S  +  ++  +N+L   N++   +T+L   + K + E    K K+  I    
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK-KYA-ISSNS 216

Query: 589 KKTEPFSDELHMNTHNMYE 645
            ++   S +   + H+ YE
Sbjct: 217 LRSRSRSFQRTSSCHSRYE 235


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = +1

Query: 409 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKH 588
           LK R    S  +  ++  +N+L   N++   +T+L   + K + E    K K+  I    
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK-KYA-ISSNS 216

Query: 589 KKTEPFSDELHMNTHNMYE 645
            ++   S +   + H+ YE
Sbjct: 217 LRSRSRSFQRTSSCHSRYE 235


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = +1

Query: 409 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKH 588
           LK R    S  +  ++  +N+L   N++   +T+L   + K + E    K K+  I    
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK-KYA-ISSNS 216

Query: 589 KKTEPFSDELHMNTHNMYE 645
            ++   S +   + H+ YE
Sbjct: 217 LRSRSRSFQRTSSCHSRYE 235


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = +1

Query: 409 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKH 588
           LK R    S  +  ++  +N+L   N++   +T+L   + K + E    K K+  I    
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK-KYA-ISSNS 216

Query: 589 KKTEPFSDELHMNTHNMYE 645
            ++   S +   + H+ YE
Sbjct: 217 LRSRSRSFQRTSSCHSRYE 235


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = +1

Query: 409 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKH 588
           LK R    S  +  ++  +N+L   N++   +T+L   + K + E    K K+  I    
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK-KYA-ISSNS 216

Query: 589 KKTEPFSDELHMNTHNMYE 645
            ++   S +   + H+ YE
Sbjct: 217 LRSRSRSFQRTSSCHSRYE 235


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = +1

Query: 409 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKH 588
           LK R    S  +  ++  +N+L   N++   +T+L   + K + E    K K+  I    
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK-KYA-ISSNS 216

Query: 589 KKTEPFSDELHMNTHNMYE 645
            ++   S +   + H+ YE
Sbjct: 217 LRSRSRSFQRTSSCHSRYE 235


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = +1

Query: 409 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKH 588
           LK R    S  +  ++  +N+L   N++   +T+L   + K + E    K K+  I    
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK-KYA-ISSNS 216

Query: 589 KKTEPFSDELHMNTHNMYE 645
            ++   S +   + H+ YE
Sbjct: 217 LRSRSRSFQRTSSCHSRYE 235


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +1

Query: 259 IEFENDSQLLQDGIKLLVQPEN 324
           +E + +  +L+DG+++ + P N
Sbjct: 115 LEVQLNLPILKDGVQIFIAPNN 136


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +1

Query: 259 IEFENDSQLLQDGIKLLVQPEN 324
           +E + +  +L+DG+++ + P N
Sbjct: 153 LEVQLNLPILKDGVQIFIAPNN 174


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +1

Query: 409 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYK 558
           LK R    S  +  ++  +N+L   N++   +T+L   + K + E    K
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,255
Number of Sequences: 438
Number of extensions: 4175
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)