Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1900
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   1.2  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   2.8  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.7  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    25   4.9  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    25   4.9  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   6.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   8.6  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 191  DAKELKEHIRE-ALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAK 337
            D KEL   +RE  L  + A+C +      +   G  I+N+  +WN+L  K
Sbjct: 1636 DWKELSVRLREDELRVQTARCMDCGTPFCQSDYGCPISNKIFTWNDLVFK 1685


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +2

Query: 260 QKKGTRRVIGHLINN-----ESKSWNELTAKYDPENKFTAKYEKELRE 388
           + K T+ ++ HL        ESK   +LT +YDP   F A++ + + E
Sbjct: 289 EHKVTKSILPHLPRELQVLLESKRVQKLTEEYDPARMFLARWAEGIVE 336


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +2

Query: 170 DKDRCAPDAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNEL 328
           D+++     KEL +     +  E   C    KKGT  +   L  +  K W EL
Sbjct: 143 DREQIVQVIKELNKGNSLEVRRELGNCLAHLKKGTLNIDNALQASLQKYWKEL 195


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 77  DDKYTDRYDNVNLDEVLSNSRLLQPYIKCIL 169
           D++  D    +N D  L++  LLQ  +KC +
Sbjct: 268 DNEQADLLHRINADHKLNSLPLLQQLVKCFI 298


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 77  DDKYTDRYDNVNLDEVLSNSRLLQPYIKCIL 169
           D++  D    +N D  L++  LLQ  +KC +
Sbjct: 268 DNEQADLLHRINADHKLNSLPLLQQLVKCFI 298


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 131 NSRLLQPYIKCILDKDRCAPDAKELKEHIRE 223
           + RL Q YI+ +LDK+  A    +LK+ +R+
Sbjct: 554 DDRLKQLYIEGVLDKEIKALKVSQLKDILRD 584


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 379 LLFVFGCKFIFGVVFSGQLIPGFAFV 302
           LLF F C +IF +V   + +  F  +
Sbjct: 299 LLFTFECLYIFSLVIDQETLSSFELI 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,332
Number of Sequences: 5004
Number of extensions: 35714
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)