Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1900
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077536-5|ABO16441.1|  278|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z74035-3|CAA98481.1|  808|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    27   5.9  
AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AF077536-5|ABO16441.1|  278|Caenorhabditis elegans Hypothetical
           protein C16A11.9 protein.
          Length = 278

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +2

Query: 197 KELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYDPENKFTAKYEK 376
           K L+ + R  L  +C+   + +K     +   + N  + S+N +  K   +NKF A +  
Sbjct: 16  KHLEANKRFQLVAQCSSLVKVEKSQPLVIKKLIFNRRTISFNGVKYKLGAKNKFEAPHTL 75

Query: 377 ELREIK 394
            ++++K
Sbjct: 76  AIKQLK 81


>Z74035-3|CAA98481.1|  808|Caenorhabditis elegans Hypothetical
           protein F47G9.4 protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = +2

Query: 119 EVLSNSRLLQPYIKCILDKDRCAPDAKELKEHIREALETECAKCTEAQKKGTRRVIGHLI 298
           ++L+ ++ L PY+ CIL+ +    D K         +E+ C + T  +     R++    
Sbjct: 464 QILTAAKQLVPYVSCILNMNAMI-DPKRCHPPDPAPMESICLEITGIEPNSQNRILAIEK 522

Query: 299 NNESKSWNELTAK 337
             E++  N+   K
Sbjct: 523 EEENRRLNQEAKK 535


>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 215 IREALETECAKCTEAQKKGTRRVIGHLINNESK--SWNELTAKYDPENKFT 361
           +++A++ E AKC    +   R VIG  + +E K  +W      ++ E  FT
Sbjct: 533 LKDAVDAEMAKCPITCQAIIRNVIGLGVEDEDKRTTWLADAENFEKEEAFT 583


>AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.7 protein.
          Length = 767

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 260 QKKGTRRVIGHLINNESKSWNELTAKYDPEN 352
           Q++ T  V+   +N E  +WN +  KY PE+
Sbjct: 544 QERVTHIVMLGQVNEEDANWNRMFCKYFPES 574


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,339,537
Number of Sequences: 27780
Number of extensions: 205121
Number of successful extensions: 596
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)