Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1899
         (429 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    71   8e-12
UniRef50_Q9U0J6 Cluster: Putative uncharacterized protein PFD044...    34   1.1  
UniRef50_Q4PF10 Cluster: Putative uncharacterized protein; n=1; ...    32   4.4  
UniRef50_UPI0000E2086B Cluster: PREDICTED: hypothetical protein;...    32   5.8  
UniRef50_Q23K09 Cluster: Putative uncharacterized protein; n=1; ...    32   5.8  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 71.3 bits (167), Expect = 8e-12
 Identities = 32/35 (91%), Positives = 32/35 (91%)
 Frame = -2

Query: 107 SPLISCRIRRRNITPPFTLFGQPIPWARKVKYLGV 3
           SPLIS RIRRRNITPP TLFG PIPWARKVKYLGV
Sbjct: 735 SPLISSRIRRRNITPPITLFGLPIPWARKVKYLGV 769


>UniRef50_Q9U0J6 Cluster: Putative uncharacterized protein PFD0445c;
           n=2; Plasmodium|Rep: Putative uncharacterized protein
           PFD0445c - Plasmodium falciparum (isolate 3D7)
          Length = 2567

 Score = 34.3 bits (75), Expect = 1.1
 Identities = 17/70 (24%), Positives = 38/70 (54%)
 Frame = +2

Query: 107 RFEYCAPTVYFFYISRLLRFISHRKTLQYLEV*QFVRLYSIRNFGNKKREITPHMWILIS 286
           R E+    + F++  + L FI H +  +++E+ Q ++ Y I NFG K + +    + +I 
Sbjct: 387 RSEHEPEHLSFYHYYKYLEFIKHEQVKEHIELMQCLKKYHITNFGYKYKIMPSDEYDIIK 446

Query: 287 SVL*RLHHKN 316
           + + ++ + N
Sbjct: 447 NDVIQIKNNN 456


>UniRef50_Q4PF10 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 1011

 Score = 32.3 bits (70), Expect = 4.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 122 HNIQISPLISCRIRRRNITPPFTLFGQPIPWA 27
           +++ IS  +  R RRR++TP F L G P P A
Sbjct: 109 YDVPISSTLPHRARRRSVTPSFELVGMPSPSA 140


>UniRef50_UPI0000E2086B Cluster: PREDICTED: hypothetical protein;
           n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
           protein - Pan troglodytes
          Length = 272

 Score = 31.9 bits (69), Expect = 5.8
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 106 HRL-FPAALGGEISHPRSPSSANLYPG-PGRSSTWE 5
           HRL FPAALGG++  P   S+  L PG PG   + E
Sbjct: 170 HRLRFPAALGGKVCPPEFASAGPLSPGSPGMRGSAE 205


>UniRef50_Q23K09 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 240

 Score = 31.9 bits (69), Expect = 5.8
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 39  RLAEEGERGCDISPPNAAGNKR*DLNIVHQPSIFSIFLDF-YVSFHTERPYSILKSSSLY 215
           ++ +EG+   DI   +  GNK+ D+ +V Q       +DF +    T+R  S++ SS LY
Sbjct: 107 QILQEGQDVSDILKKHVQGNKKVDVFLVSQQQQNEKIVDFSFEGNVTQRENSLMNSSKLY 166


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 430,998,004
Number of Sequences: 1657284
Number of extensions: 7954756
Number of successful extensions: 19349
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19346
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)