Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1899
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.71 
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   3.8  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   5.0  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   6.6  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   6.6  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   6.6  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    25   6.6  

>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 24/85 (28%), Positives = 38/85 (44%)
 Frame = -3

Query: 259 NLAFFISKVSNTIQSYKLLDFKIL*GLSV*NET*KSRNIEKIDGWCTIFKSHRLFPAALG 80
           N+A F     N    Y  LD  +L GL   + +  + +  KI      +KSH++F   L 
Sbjct: 255 NIALFKQTAKNF---YDTLDISLLLGLFDKSISMLNCHSSKISDGDIPYKSHQVFLQELQ 311

Query: 79  GEISHPRSPSSANLYPGPGRSSTWE 5
            + S  ++ SS  L     +SS W+
Sbjct: 312 NKYSEIKTYSSNKLNKSSIKSSLWK 336


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 189 SILKSSSLYDCIVFETLEIKNARLHPICG 275
           ++ K  S Y C++  ++  K   +HP CG
Sbjct: 11  TVKKPRSRYGCLICRSMRKKCDEVHPQCG 39


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 189 SILKSSSLYDCIVFETLEIKNARLHPICGF*LVL 290
           SIL +S +Y C   E L  K+ R+  +C F ++L
Sbjct: 149 SILDASLIYLCFTSEHLGDKSTRMLFVCEFSVLL 182


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +3

Query: 111 LNIVHQPSIFSIFLDFYVSFHTERP 185
           +N++H+P+ +  + DF+   H  +P
Sbjct: 206 INVLHRPTFYVRYNDFWEKPHLRKP 230


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = -2

Query: 251 VFYFQSFEYYTVVQTARLQDTVRSFCXXXXXXXXXXXXXXRLVHNIQISPL 99
           + +F S   Y+V+  A L DTV   C               ++ N+  SP+
Sbjct: 222 LMFFDSMIRYSVIPKASLYDTVLILCSTYISTYSYSKLAQSVIFNLISSPV 272


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 94  PAALGGEISHPRSPSSANLYPG 29
           PA +GG +++  SPSS+   PG
Sbjct: 127 PATMGGGLNNLSSPSSSLYLPG 148


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 131 VYFFYISRLLRFISHRKTLQYLEV*QFVRLY 223
           +YFF ISRL  FIS+   L  L +  F+ LY
Sbjct: 1   MYFFTISRLTSFISY-GILGALGILTFLYLY 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,197
Number of Sequences: 5004
Number of extensions: 35773
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)