Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1899
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0723 + 20954827-20954905,20954974-20956277                       28   3.7  
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451...    28   3.7  
09_02_0591 - 10997771-10998054,10998671-10999017,10999088-109992...    27   6.4  
02_05_0215 + 26833213-26833599                                         27   8.5  

>07_03_0723 + 20954827-20954905,20954974-20956277
          Length = 460

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 271 HMGCNLAFFISKVSNTIQSYKL 206
           H  CNL FF+  + NT+ +Y++
Sbjct: 406 HPDCNLIFFVYGLDNTLMAYEM 427


>03_01_0614 +
           4515515-4515540,4515988-4516209,4516681-4516768,
           4517084-4517123,4517259-4517305,4517464-4517584,
           4517931-4518091
          Length = 234

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 97  FPAALGGEISHPRSPSSANLYPGPGRSSTWES 2
           +P ++ G  SHP +PSS+N+ P    S   +S
Sbjct: 30  YPQSVVGSSSHPSTPSSSNVGPHQRASDNSQS 61


>09_02_0591 -
           10997771-10998054,10998671-10999017,10999088-10999247,
           10999333-10999401,11000256-11000382,11000759-11001021,
           11001122-11001279,11001390-11001464,11002876-11002947,
           11003039-11003177,11003275-11003744,11003907-11003935
          Length = 730

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 300 DYITKIRGAQCETPPSPSLAPN--TTLSIYIYKNELLLVSLAKT 425
           D+  +  G  C+TP +PSL+ N   TL++ +    L+L  L  T
Sbjct: 260 DFSYETDGNMCKTPVTPSLSRNRAVTLAVSVVAPVLVLAILVLT 303


>02_05_0215 + 26833213-26833599
          Length = 128

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 282 LVLFFEDYITKIRGAQCETPPSPSLAPNT 368
           LVLFF   +    G  C TP +PS  P+T
Sbjct: 13  LVLFFT--VASACGKYCPTPSTPSTTPST 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,414,109
Number of Sequences: 37544
Number of extensions: 213700
Number of successful extensions: 609
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)