Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1899
         (429 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M97192-1|AAA28575.1|  991|Drosophila melanogaster glutamate rece...    28   4.6  
BT003218-1|AAO24973.1|  726|Drosophila melanogaster RE03717p pro...    28   4.6  
AE014296-1137|AAF50652.2|  991|Drosophila melanogaster CG8442-PA...    28   4.6  

>M97192-1|AAA28575.1|  991|Drosophila melanogaster glutamate
           receptor subunit kainatesubtype protein.
          Length = 991

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 36  YRLAEEGERGCDISPPNAAG 95
           Y LA   ++GCDI+PP+ AG
Sbjct: 686 YSLAAFMQQGCDITPPSIAG 705


>BT003218-1|AAO24973.1|  726|Drosophila melanogaster RE03717p
           protein.
          Length = 726

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 36  YRLAEEGERGCDISPPNAAG 95
           Y LA   ++GCDI+PP+ AG
Sbjct: 421 YSLAAFMQQGCDITPPSIAG 440


>AE014296-1137|AAF50652.2|  991|Drosophila melanogaster CG8442-PA
           protein.
          Length = 991

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 36  YRLAEEGERGCDISPPNAAG 95
           Y LA   ++GCDI+PP+ AG
Sbjct: 686 YSLAAFMQQGCDITPPSIAG 705


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,292,580
Number of Sequences: 53049
Number of extensions: 367771
Number of successful extensions: 888
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1334434944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)