Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1899
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80023-4|AAG24038.1|  318|Caenorhabditis elegans Serpentine rece...    29   1.1  
Z69885-2|CAC35825.1|  469|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z69885-1|CAC35824.1|  467|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr...    27   7.5  
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec...    27   7.5  
AF098503-1|AAC67408.1|  360|Caenorhabditis elegans Hypothetical ...    27   7.5  

>U80023-4|AAG24038.1|  318|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 25 protein.
          Length = 318

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 297 EDYITKIRGAQCETPPSPSLAPNTTLSIYI 386
           ++ + K+   QCETP SP   PN     YI
Sbjct: 289 KENVPKLEQGQCETPESPRNTPNLPYIYYI 318


>Z69885-2|CAC35825.1|  469|Caenorhabditis elegans Hypothetical
           protein T04C10.2b protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 306 ITKIRGAQCETPPSPSLAPNTTL 374
           + ++R AQ + PP PS+AP  TL
Sbjct: 437 LNEMRAAQGQAPPIPSMAPRGTL 459


>Z69885-1|CAC35824.1|  467|Caenorhabditis elegans Hypothetical
           protein T04C10.2a protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 306 ITKIRGAQCETPPSPSLAPNTTL 374
           + ++R AQ + PP PS+AP  TL
Sbjct: 435 LNEMRAAQGQAPPIPSMAPRGTL 457


>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical
           protein C29E6.2 protein.
          Length = 1193

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 135 IFSIFLDFYVSFHTERPYSILKSSSLYDCIVFETLE 242
           +F + L  YV  HT+ PY++    S YD   F+  E
Sbjct: 805 VFIVSLTQYVR-HTKAPYNVWNEESYYDSEYFDENE 839


>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient
           receptor potential subfamilyA-1 protein.
          Length = 1206

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 135 IFSIFLDFYVSFHTERPYSILKSSSLYDCIVFETLE 242
           +F + L  YV  HT+ PY++    S YD   F+  E
Sbjct: 818 VFIVSLTQYVR-HTKAPYNVWNEESYYDSEYFDENE 852


>AF098503-1|AAC67408.1|  360|Caenorhabditis elegans Hypothetical
           protein H35N09.2 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 210 LYDCIVFETLEIKNARLHPIC 272
           LYD ++FE L I    L P+C
Sbjct: 20  LYDPLIFEILTINTLNLSPLC 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,012,950
Number of Sequences: 27780
Number of extensions: 195698
Number of successful extensions: 452
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)