Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1898
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 32 0.087
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.4
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 27 2.5
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.7
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 26 5.7
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 25 7.6
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 7.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 10.0
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 25 10.0
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 31.9 bits (69), Expect = 0.087
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = -1
Query: 566 TSTLSKEVLYSWARRRWSLSFLLVPSSSGMMKSSAVTLTKRIDPDLSTASSGISLIVTLT 387
TST + + +S S + L+PSSS SS +T+ + ++S+ S SLI TLT
Sbjct: 573 TSTSTPALTHSITPSNTSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLA-SLISTLT 631
Score = 25.8 bits (54), Expect = 5.7
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = -1
Query: 500 LVPSSSGMMKSSAVTLTKRIDPDLSTASSGISLIVTLTVASTQWKATMGSFSSVTLNLNK 321
LV SS+ K S+++ ++ + ++ASS +SL + ST S SSV+L +
Sbjct: 498 LVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVSLQTSS 557
Query: 320 *VPLGVP 300
+ + P
Sbjct: 558 SLIISSP 564
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -1
Query: 470 SSAVTLTKRIDPDLSTASSGISLIVTLTVASTQWKATMGSFSSVTLNLNK*VPLGVPSFI 291
SSA + T + +S+ASS +S + AS A+ + ++ +N V +GV S I
Sbjct: 254 SSASSATSSVSSVVSSASSALSASASSASASVSSSASSDASPALKTGINALVAVGVVSAI 313
Query: 290 VI 285
+
Sbjct: 314 AL 315
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 488 SSGMMKSSAVTLTKRIDPDLSTASSGISLIVT-LTVASTQWKATMGSFSSVTLNLN 324
SSG S T T D D+ TAS+ S T + +S+ + S +SV++ LN
Sbjct: 969 SSGFQTVSNTTATSGSDDDVKTASTSSSTSYTSSSSSSSSTTSAASSKASVSMGLN 1024
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Frame = +1
Query: 223 MWLPSYEQRSPYFDVHS-----NTGMITMKEGTPNGTY-----LLRFNVTEENEPIVAFH 372
+WL Y+Q +PY+ V +IT TY + V ++N+ +V F+
Sbjct: 372 LWLTDYDQSNPYYTVIKTMVAFRKFVITQDPDWVTSTYQSIESAVDHYVGQKNDVLVMFN 431
Query: 373 WVEATVNVTIKEI 411
+ T N+TI E+
Sbjct: 432 NMGVTNNLTIYEV 444
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/71 (19%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 415 EEAVDKSGSIRFVNVTAEDFIIPEEDGTSKKDKLHRRLAQLYNTSLDNVDVFTVFSKP-T 591
E+ + G + + + +++ I EE+ S ++K +L + ++ + DN F ++ P +
Sbjct: 142 EDDFNGDGCQQMIEIESDEAISEEEEDLSNENKSESQLGESFSFNQDN--TFVNYASPAS 199
Query: 592 VKDMFLDVRFS 624
+ + F++ + S
Sbjct: 200 ITEEFVEPKDS 210
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +1
Query: 247 RSPYFDVHSNTGMITMKEGTPNGTYLLRFNVTEENEPIVAFHWVEATVNVTIKEIPEEAV 426
+S +D N ++ TP + + EEN+ ++ V A+ VT+K++ E
Sbjct: 88 KSSNYDPFENLEILHQLSNTPRDKDAVIHDKIEENKRPISQPQVSASEKVTLKDLSLEPH 147
Query: 427 DKSGSIRFVNVTAEDFI 477
F N+ +E I
Sbjct: 148 QPVSLPAFENIGSETSI 164
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 425 STNLGQFVSLTSPLKTSSYLRRMVPVKRISS 517
+T + LTSP+KTS+ + ++P + S
Sbjct: 458 NTTISSSPPLTSPVKTSANIPNLLPTSELDS 488
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 229 LPSYEQRSPYFDVHSNTGMITMKEGTPNGTYLLRFN 336
+PSY +S F NT T E +PNG L+F+
Sbjct: 577 IPSYSDKSENF----NTTSFTNHERSPNGNNNLKFS 608
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = -1
Query: 515 SLSFLLVPSSSGMMKSSAVTLTKRIDPDLSTASSGISLIVTLTVAS----TQWKATMGSF 348
SLS +PS+S S++ +L+ +++SS S I++ + +S T +T+ S
Sbjct: 234 SLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSS 293
Query: 347 SS 342
SS
Sbjct: 294 SS 295
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 412 PEEAVDKSGSIRFVNVTAED 471
PEE+V K+GS+ +VT D
Sbjct: 183 PEESVGKTGSVMSTSVTVTD 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.136 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,793
Number of Sequences: 5004
Number of extensions: 61536
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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