Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1898
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880...    29   2.6  
05_01_0475 - 3818121-3820565                                           29   2.6  
08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526...    29   4.5  
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639...    29   4.5  
09_03_0196 + 13374054-13374456,13375145-13375707,13375935-133759...    28   7.8  
05_05_0167 - 22868506-22868580,22868693-22869103                       28   7.8  
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692...    28   7.8  

>12_01_0906 +
           8799284-8799441,8800865-8801690,8801933-8802055,
           8802144-8802210,8802611-8802714,8802798-8802900,
           8803103-8803401,8804009-8804263,8805471-8805776,
           8805866-8806194,8806829-8806916,8807027-8807164,
           8807438-8807458
          Length = 938

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +3

Query: 261 RRPQQHGHDNNERGNP*RHLFVEIQCNRGERTHSRLPLGRGYSQCDDQGNTRRSRR 428
           RRP +   D+ E G   R    +    RG+R   R       S+  D G +RR RR
Sbjct: 103 RRPSRVSDDDKEGGRRRRRRSTDSDDERGDRHRRRHRRRSPSSESSDGGRSRRHRR 158


>05_01_0475 - 3818121-3820565
          Length = 814

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
 Frame = -1

Query: 623 ENLTSKNMSFTVGLLNTVKTSTLSKEVLYSWARRRWSLSFLLVPSSSGMMKSSAVTLTKR 444
           + L S+N  FT+G                +W    W  +  +  +     + S VT  + 
Sbjct: 40  DKLVSRNGRFTLGFFQPSVVVKSGNITSPNWYVGIWFSNISVFTTVWVANRDSPVTELQL 99

Query: 443 IDPDLSTASSGISLIVTLTVASTQWKATMGSFSSVTLNLNK*VPLGVPSFIVI--MPVLL 270
               L  +  G +L+++   AS  W +T+   S+ T+N +  V L     +VI   P +L
Sbjct: 100 NQTQLKLSKDG-NLVISSN-ASIIWSSTVNRTSATTMNSSTSVVLSNDGNLVIGSSPNVL 157

Query: 269 WTS 261
           W S
Sbjct: 158 WQS 160


>08_01_1013 +
           10251463-10251858,10252366-10252434,10252545-10252652,
           10253261-10253326,10254258-10254395,10255047-10255094,
           10256292-10256398,10257228-10257302,10258317-10258368,
           10258485-10259068,10259944-10260150,10260236-10260407
          Length = 673

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 340 TEENEPIVAFHWVEATVNVTIKEIPEEAVDKSGSIRFVNVTAEDFIIPEEDG--TSKKDK 513
           TEE+EP ++  + +A  NV  K   E   D  G I F  ++  D+++    G  T+ +DK
Sbjct: 271 TEESEPWISLTYQQAGSNVARKYHAEMVSDDGGPIDF-TMSTSDYVMSLCPGGSTNSRDK 329


>05_02_0078 -
           6386278-6386291,6386462-6386594,6386721-6388613,
           6391153-6391239,6391691-6391765,6393982-6394327,
           6394428-6394450
          Length = 856

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 497 VPSSSGMMKSSAVTLTKRIDPDLSTASSGISLI 399
           +PSS   M    V  T++ID D S  SSG+  I
Sbjct: 721 IPSSVNTMSRDTVWKTRKIDVDNSNISSGVRYI 753


>09_03_0196 +
           13374054-13374456,13375145-13375707,13375935-13375976,
           13376059-13376087,13376309-13376534,13376970-13377008,
           13377126-13377155
          Length = 443

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -3

Query: 150 LALIVIYEDVTMPWSHWIIIPV 85
           + L+V+ +  ++PW HWI++ +
Sbjct: 333 MLLLVVLDRESLPWRHWILLVI 354


>05_05_0167 - 22868506-22868580,22868693-22869103
          Length = 161

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +1

Query: 301 GTPNGTYLLRFNV-----TEENEPIVAF-HWVEATVNVTIKEIPEEAVDKSGS 441
           G P+GT  L   V      + + PIV + HWV A +  ++K +PE    K G+
Sbjct: 43  GVPDGTRSLALVVHDVDAPDPDGPIVPWTHWVVANIPPSVKGLPEGFSGKEGA 95


>01_06_0343 + 28566513-28566644,28566791-28568494,28569178-28569240,
            28569241-28569310,28570438-28570715,28571886-28571963,
            28573017-28573715,28573811-28573913,28574096-28574196,
            28574272-28574446,28574843-28575013,28575534-28575634,
            28575706-28575771
          Length = 1246

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/75 (25%), Positives = 30/75 (40%)
 Frame = -3

Query: 516  ELILFTGTILLRYDEVFSGDVNETN*PRFVDGFFWYFLDRHIDCSLDPMEGDYGFVLLCY 337
            +L+      L R  + FSG V ++      DGFF    +   D SL     +    +L  
Sbjct: 875  QLVTKLSNTLARLGDTFSGYVKDSRLRSIADGFFNQVSELVPDASLTSSLEEVSEKILGL 934

Query: 336  IESQQIGAVRGSLFH 292
            +E  Q  A+   + H
Sbjct: 935  LELPQTSAISDQISH 949


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,098,969
Number of Sequences: 37544
Number of extensions: 413558
Number of successful extensions: 1129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)