Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1898
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 82 4e-16
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 82 4e-16
Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical pr... 82 4e-16
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 82 4e-16
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 82 4e-16
AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein. 82 4e-16
AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical ... 32 0.43
AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical ... 32 0.43
AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical ... 32 0.43
AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a... 32 0.43
AL031633-4|CAA21022.1| 260|Caenorhabditis elegans Hypothetical ... 30 1.3
Z66500-8|CAE17939.1| 312|Caenorhabditis elegans Hypothetical pr... 30 1.7
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 30 1.7
U64848-2|AAM29669.2| 376|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 29 3.0
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 29 3.0
AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin p... 29 4.0
U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family... 28 5.3
AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical... 28 7.0
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 27 9.2
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 27 9.2
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 81.8 bits (193), Expect = 4e-16
Identities = 70/233 (30%), Positives = 105/233 (45%), Gaps = 10/233 (4%)
Frame = +1
Query: 1 KEYKIPVAITDSGTPRLTGVSVLHVVIGDRNDNPMGPGHSDIFVYNYKGEAPDTEIGRVF 180
K +IP+ + D R + +HV+IGD NDN M G I V +Y G +T IGRV+
Sbjct: 1955 KILEIPLILADRAGRR--NEASVHVIIGDLNDNTMHDGRMTIHVNSYLGRLKETVIGRVY 2012
Query: 181 VXXXXXXXXXXKRFMWLPSYEQRSPYFDVHSNTGMITMKEGTPNGTYLLRFNVTEENEPI 360
V K F W S P F++ S+ G ITM GTY + NV +
Sbjct: 2013 VDDADDWDLGDKTFSWKDS----RPGFEL-SDKGSITMAGEMAAGTYTMSANVHDNARDE 2067
Query: 361 VAFHWVEATVNVTIKEIPEEAVDKSGSIRFVNV------TAEDFIIPEEDGTSKKDKLHR 522
A +V VN +P+ A D GS++ + +DFI + +G S D +
Sbjct: 2068 DAVGYVTVIVNA----VPQIAFDNQGSVQLLIAEETPLQLPDDFIRADSNGQSLMDTFKQ 2123
Query: 523 RLAQLYNTSLDNVDVFTV---FSKPTVKDM-FLDVRFSXHGSPYYSPEKLDSM 669
+ + VDVF+V + +D+ L+VRF+ GS Y +L+ +
Sbjct: 2124 EMTAYMGGDV-TVDVFSVQVGIATLQTRDVPVLNVRFNARGSTYRDTAQLNGL 2175
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 81.8 bits (193), Expect = 4e-16
Identities = 70/233 (30%), Positives = 105/233 (45%), Gaps = 10/233 (4%)
Frame = +1
Query: 1 KEYKIPVAITDSGTPRLTGVSVLHVVIGDRNDNPMGPGHSDIFVYNYKGEAPDTEIGRVF 180
K +IP+ + D R + +HV+IGD NDN M G I V +Y G +T IGRV+
Sbjct: 1955 KILEIPLILADRAGRR--NEASVHVIIGDLNDNTMHDGRMTIHVNSYLGRLKETVIGRVY 2012
Query: 181 VXXXXXXXXXXKRFMWLPSYEQRSPYFDVHSNTGMITMKEGTPNGTYLLRFNVTEENEPI 360
V K F W S P F++ S+ G ITM GTY + NV +
Sbjct: 2013 VDDADDWDLGDKTFSWKDS----RPGFEL-SDKGSITMAGEMAAGTYTMSANVHDNARDE 2067
Query: 361 VAFHWVEATVNVTIKEIPEEAVDKSGSIRFVNV------TAEDFIIPEEDGTSKKDKLHR 522
A +V VN +P+ A D GS++ + +DFI + +G S D +
Sbjct: 2068 DAVGYVTVIVNA----VPQIAFDNQGSVQLLIAEETPLQLPDDFIRADSNGQSLMDTFKQ 2123
Query: 523 RLAQLYNTSLDNVDVFTV---FSKPTVKDM-FLDVRFSXHGSPYYSPEKLDSM 669
+ + VDVF+V + +D+ L+VRF+ GS Y +L+ +
Sbjct: 2124 EMTAYMGGDV-TVDVFSVQVGIATLQTRDVPVLNVRFNARGSTYRDTAQLNGL 2175
>Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical
protein W02B9.1a protein.
Length = 1223
Score = 81.8 bits (193), Expect = 4e-16
Identities = 70/233 (30%), Positives = 105/233 (45%), Gaps = 10/233 (4%)
Frame = +1
Query: 1 KEYKIPVAITDSGTPRLTGVSVLHVVIGDRNDNPMGPGHSDIFVYNYKGEAPDTEIGRVF 180
K +IP+ + D R + +HV+IGD NDN M G I V +Y G +T IGRV+
Sbjct: 258 KILEIPLILADRAGRR--NEASVHVIIGDLNDNTMHDGRMTIHVNSYLGRLKETVIGRVY 315
Query: 181 VXXXXXXXXXXKRFMWLPSYEQRSPYFDVHSNTGMITMKEGTPNGTYLLRFNVTEENEPI 360
V K F W S P F++ S+ G ITM GTY + NV +
Sbjct: 316 VDDADDWDLGDKTFSWKDS----RPGFEL-SDKGSITMAGEMAAGTYTMSANVHDNARDE 370
Query: 361 VAFHWVEATVNVTIKEIPEEAVDKSGSIRFVNV------TAEDFIIPEEDGTSKKDKLHR 522
A +V VN +P+ A D GS++ + +DFI + +G S D +
Sbjct: 371 DAVGYVTVIVNA----VPQIAFDNQGSVQLLIAEETPLQLPDDFIRADSNGQSLMDTFKQ 426
Query: 523 RLAQLYNTSLDNVDVFTV---FSKPTVKDM-FLDVRFSXHGSPYYSPEKLDSM 669
+ + VDVF+V + +D+ L+VRF+ GS Y +L+ +
Sbjct: 427 EMTAYMGGDV-TVDVFSVQVGIATLQTRDVPVLNVRFNARGSTYRDTAQLNGL 478
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 81.8 bits (193), Expect = 4e-16
Identities = 70/233 (30%), Positives = 105/233 (45%), Gaps = 10/233 (4%)
Frame = +1
Query: 1 KEYKIPVAITDSGTPRLTGVSVLHVVIGDRNDNPMGPGHSDIFVYNYKGEAPDTEIGRVF 180
K +IP+ + D R + +HV+IGD NDN M G I V +Y G +T IGRV+
Sbjct: 1955 KILEIPLILADRAGRR--NEASVHVIIGDLNDNTMHDGRMTIHVNSYLGRLKETVIGRVY 2012
Query: 181 VXXXXXXXXXXKRFMWLPSYEQRSPYFDVHSNTGMITMKEGTPNGTYLLRFNVTEENEPI 360
V K F W S P F++ S+ G ITM GTY + NV +
Sbjct: 2013 VDDADDWDLGDKTFSWKDS----RPGFEL-SDKGSITMAGEMAAGTYTMSANVHDNARDE 2067
Query: 361 VAFHWVEATVNVTIKEIPEEAVDKSGSIRFVNV------TAEDFIIPEEDGTSKKDKLHR 522
A +V VN +P+ A D GS++ + +DFI + +G S D +
Sbjct: 2068 DAVGYVTVIVNA----VPQIAFDNQGSVQLLIAEETPLQLPDDFIRADSNGQSLMDTFKQ 2123
Query: 523 RLAQLYNTSLDNVDVFTV---FSKPTVKDM-FLDVRFSXHGSPYYSPEKLDSM 669
+ + VDVF+V + +D+ L+VRF+ GS Y +L+ +
Sbjct: 2124 EMTAYMGGDV-TVDVFSVQVGIATLQTRDVPVLNVRFNARGSTYRDTAQLNGL 2175
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 81.8 bits (193), Expect = 4e-16
Identities = 70/233 (30%), Positives = 105/233 (45%), Gaps = 10/233 (4%)
Frame = +1
Query: 1 KEYKIPVAITDSGTPRLTGVSVLHVVIGDRNDNPMGPGHSDIFVYNYKGEAPDTEIGRVF 180
K +IP+ + D R + +HV+IGD NDN M G I V +Y G +T IGRV+
Sbjct: 1955 KILEIPLILADRAGRR--NEASVHVIIGDLNDNTMHDGRMTIHVNSYLGRLKETVIGRVY 2012
Query: 181 VXXXXXXXXXXKRFMWLPSYEQRSPYFDVHSNTGMITMKEGTPNGTYLLRFNVTEENEPI 360
V K F W S P F++ S+ G ITM GTY + NV +
Sbjct: 2013 VDDADDWDLGDKTFSWKDS----RPGFEL-SDKGSITMAGEMAAGTYTMSANVHDNARDE 2067
Query: 361 VAFHWVEATVNVTIKEIPEEAVDKSGSIRFVNV------TAEDFIIPEEDGTSKKDKLHR 522
A +V VN +P+ A D GS++ + +DFI + +G S D +
Sbjct: 2068 DAVGYVTVIVNA----VPQIAFDNQGSVQLLIAEETPLQLPDDFIRADSNGQSLMDTFKQ 2123
Query: 523 RLAQLYNTSLDNVDVFTV---FSKPTVKDM-FLDVRFSXHGSPYYSPEKLDSM 669
+ + VDVF+V + +D+ L+VRF+ GS Y +L+ +
Sbjct: 2124 EMTAYMGGDV-TVDVFSVQVGIATLQTRDVPVLNVRFNARGSTYRDTAQLNGL 2175
>AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.
Length = 1223
Score = 81.8 bits (193), Expect = 4e-16
Identities = 70/233 (30%), Positives = 105/233 (45%), Gaps = 10/233 (4%)
Frame = +1
Query: 1 KEYKIPVAITDSGTPRLTGVSVLHVVIGDRNDNPMGPGHSDIFVYNYKGEAPDTEIGRVF 180
K +IP+ + D R + +HV+IGD NDN M G I V +Y G +T IGRV+
Sbjct: 258 KILEIPLILADRAGRR--NEASVHVIIGDLNDNTMHDGRMTIHVNSYLGRLKETVIGRVY 315
Query: 181 VXXXXXXXXXXKRFMWLPSYEQRSPYFDVHSNTGMITMKEGTPNGTYLLRFNVTEENEPI 360
V K F W S P F++ S+ G ITM GTY + NV +
Sbjct: 316 VDDADDWDLGDKTFSWKDS----RPGFEL-SDKGSITMAGEMAAGTYTMSANVHDNARDE 370
Query: 361 VAFHWVEATVNVTIKEIPEEAVDKSGSIRFVNV------TAEDFIIPEEDGTSKKDKLHR 522
A +V VN +P+ A D GS++ + +DFI + +G S D +
Sbjct: 371 DAVGYVTVIVNA----VPQIAFDNQGSVQLLIAEETPLQLPDDFIRADSNGQSLMDTFKQ 426
Query: 523 RLAQLYNTSLDNVDVFTV---FSKPTVKDM-FLDVRFSXHGSPYYSPEKLDSM 669
+ + VDVF+V + +D+ L+VRF+ GS Y +L+ +
Sbjct: 427 EMTAYMGGDV-TVDVFSVQVGIATLQTRDVPVLNVRFNARGSTYRDTAQLNGL 478
>AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical
protein Y71H10B.1c protein.
Length = 570
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 256 YFDVHSNTGMITMKEGTPNGTYLLRF-NVTEENEPIVAFHWVEATVNVTIKEIPEEAV 426
+FD H + M+T K G G ++ + ++ ++ ++ + VE+T+ + E PE+ V
Sbjct: 162 FFDKHPHYSMLTDKTGVKGGEVMMSYKSIFQDLRRVIDWVHVESTMKKQVMENPEKYV 219
>AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical
protein Y71H10B.1a protein.
Length = 556
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 256 YFDVHSNTGMITMKEGTPNGTYLLRF-NVTEENEPIVAFHWVEATVNVTIKEIPEEAV 426
+FD H + M+T K G G ++ + ++ ++ ++ + VE+T+ + E PE+ V
Sbjct: 148 FFDKHPHYSMLTDKTGVKGGEVMMSYKSIFQDLRRVIDWVHVESTMKKQVMENPEKYV 205
>AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical
protein Y71H10B.1b protein.
Length = 559
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 256 YFDVHSNTGMITMKEGTPNGTYLLRF-NVTEENEPIVAFHWVEATVNVTIKEIPEEAV 426
+FD H + M+T K G G ++ + ++ ++ ++ + VE+T+ + E PE+ V
Sbjct: 151 FFDKHPHYSMLTDKTGVKGGEVMMSYKSIFQDLRRVIDWVHVESTMKKQVMENPEKYV 208
>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
assigned gene nameprotein 203 protein.
Length = 1220
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 301 GTPNGTYLLRFNVTEENEPIVAFHWVEATVNVTIKEIPEEAVD 429
G PN + ++ N+ ++ + + +V AT+ +TI + EEA D
Sbjct: 454 GNPNAVWTVKKNIEDQYDSYIVVSFVNATLALTIGDTVEEASD 496
>AL031633-4|CAA21022.1| 260|Caenorhabditis elegans Hypothetical
protein Y39A1A.6 protein.
Length = 260
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 216 EVHVAAFIRAEKPLLRRPQQHGHDN-NERGNP*RHLFVEIQCNRGERTHSRLPLGRGYSQ 392
+++VA + +++ ++H HDN N H+FV ++ + R P G+
Sbjct: 184 QMYVADAFPVQSNIVKGARRHAHDNWNTIRYRYIHIFVRLEEGPAPQQKQRHPQKNGWDH 243
Query: 393 CDDQGNTRRSR 425
D+ N RSR
Sbjct: 244 MDEYYNYLRSR 254
>Z66500-8|CAE17939.1| 312|Caenorhabditis elegans Hypothetical
protein T05C12.11 protein.
Length = 312
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = -1
Query: 623 ENLTSKNMSFTVGLLNTVKTSTLSKEVLYSW---ARRRWSLSFLL 498
+N T+K FT+G TV +ST ++ SW + WS++F+L
Sbjct: 230 KNDTNKWSKFTLGKNPTVSSSTSEPKMESSWTHAVNKEWSITFVL 274
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 7 YKIPVAITDSGTPRLTGVSVLHVVIGDRNDNPMGPGHSDIFVYNYKGEAPDTEI 168
Y + + D G P L+ L+++I D NDNP G + N+ G P+T++
Sbjct: 195 YSMRLTAIDQGVPELSSSCHLNILILDINDNPPNFGIRSL-TLNWNG-LPNTKL 246
Score = 27.9 bits (59), Expect = 7.0
Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 6/176 (3%)
Frame = +1
Query: 1 KEYKIPVAITDSGTPRLTGVSVLHVVIGDRNDN-PMGPGHSDIFVYNYKGEAPDTEIGRV 177
+ Y+I V +TD T L V + D NDN P+ +F+ E EIG+
Sbjct: 2212 QSYRIKVKLTDGAWLIETS---LFVNVKDVNDNAPIFEKPEYLFI----SEENSAEIGQF 2264
Query: 178 FVXXXXXXXXXXKRFMWLPSYEQRSPYFDVHSNTGMIT-MKEGTPNGTYLLRFNVTEENE 354
R Y SPYF + +TG+++ ++ P L+ T+
Sbjct: 2265 HASDMDSENNGKIR------YSVTSPYFKIEPSTGVLSRFRQQLPQPLMSLKVTATDHGV 2318
Query: 355 P----IVAFHWVEATVNVTIKEIPEEAVDKSGSIRFVNVTAEDFIIPEEDGTSKKD 510
P V H V+ + IK+ K G + + + I P + T +D
Sbjct: 2319 PRLQKTVLAHLVDKSSFGKIKQRRIRETTKVGDVIGKKIDSGATIFPLDVATVTRD 2374
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 4 EYKIPVAITDSGTPRLTGVSVLHVVIGDRNDNPMGPGHSDIF 129
EY + V D G PR G + + V + D +DN P S IF
Sbjct: 2111 EYHLIVEAIDDGKPRRRGNTTVIVTVLDEDDN--APRFSRIF 2150
>U64848-2|AAM29669.2| 376|Caenorhabditis elegans Hypothetical
protein C50E3.6 protein.
Length = 376
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 379 EATVNVTIKEIPEEAVDKSGSIRFVNVTAEDF-IIPEEDGTSKKDKLHRRLAQLYNTSLD 555
E +T KE E V++ ++ F NV E I+ ++ G D LH +A S D
Sbjct: 220 EKPEKMTEKE-EEPRVEEKENVEFANVGKESSPILLQKRGDRSSDHLHHNVASFSRNSDD 278
Query: 556 NV 561
NV
Sbjct: 279 NV 280
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 7 YKIPVAITDSGTPRLTGVSVLHVVIGDRNDN 99
Y + V D GTP L + + VV+ D NDN
Sbjct: 547 YSLKVTARDMGTPSLNTSTTIAVVLKDINDN 577
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 13 IPVAITDSGTPRLTGVSVLHVVIGDRNDN 99
+P+ D GTP L+ S + + + D NDN
Sbjct: 860 LPIFARDRGTPSLSAASEITLTLSDVNDN 888
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 7 YKIPVAITDSGTPRLTGVSVLHVVIGDRNDN 99
Y + V D GTP L + + VV+ D NDN
Sbjct: 547 YSLKVTARDMGTPSLNTSTTIAVVLKDINDN 577
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 13 IPVAITDSGTPRLTGVSVLHVVIGDRNDN 99
+P+ D GTP L+ S + + + D NDN
Sbjct: 860 LPIFARDRGTPSLSAASEITLTLSDVNDN 888
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 7 YKIPVAITDSGTPRLTGVSVLHVVIGDRNDN 99
Y + V D GTP L + + VV+ D NDN
Sbjct: 547 YSLKVTARDMGTPSLNTSTTIAVVLKDINDN 577
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 13 IPVAITDSGTPRLTGVSVLHVVIGDRNDN 99
+P+ D GTP L+ S + + + D NDN
Sbjct: 860 LPIFARDRGTPSLSAASEITLTLSDVNDN 888
>AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin
protein 1 protein.
Length = 184
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -2
Query: 217 SCPVDPSRRGRRQTPYQSPCLVPRPYSYIRRCHYALVPLDYHSCHL*RHAAPKHP 53
SC + + + + TP+QSPC P+P Y Y+ P + H H +P P
Sbjct: 133 SCGLCSASQSLQSTPFQSPCF-PQPLQY--PSSYSNPPSQMYYHH--HHQSPSFP 182
>U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family
protein 9 protein.
Length = 623
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 1 KEYKIPVAITDSGTPRLTGVSVLHVVIGDRND 96
K++ + + D G P L LHV I D ND
Sbjct: 203 KKFSVEIEARDQGEPSLASTVPLHVTIVDVND 234
>AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical
protein F07B7.14 protein.
Length = 401
Score = 27.9 bits (59), Expect = 7.0
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Frame = +3
Query: 168 W*GVCRRPR-RLGSTGQEVHVAAFIRAEKPLLRRPQQHGHDNNERGNP*RHLFVEIQCNR 344
W CRRP R S +E I RRP+ + P + + R
Sbjct: 48 WPASCRRPEPRSSSQPKENLPEENISTWPASCRRPEPRSSSQPKENPPKEKISTRLASCR 107
Query: 345 GERTHSRLPLGRGYS 389
RT S LPL G S
Sbjct: 108 RPRTSSSLPLSLGPS 122
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 1 KEYKIPVAITDSGTPRLTGVSVLHVVIGDRNDN 99
K+Y + V D G P L ++L + + D ND+
Sbjct: 3269 KKYNLKVIAKDGGRPPLRSEALLEIHVEDENDH 3301
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 1 KEYKIPVAITDSGTPRLTGVSVLHVVIGDRNDN 99
K+Y + V D G P L ++L + + D ND+
Sbjct: 3269 KKYNLKVIAKDGGRPPLRSEALLEIHVEDENDH 3301
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 1 KEYKIPVAITDSGTPRLTGVSVLHVVIGDRNDN 99
K+Y + V D G P L ++L + + D ND+
Sbjct: 3269 KKYNLKVIAKDGGRPPLRSEALLEIHVEDENDH 3301
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 90 PVTYDDMQHRNTRQPRSARVGYSYRYLV 7
P Y+D HR R R+ R GY+Y +++
Sbjct: 630 PNHYEDYVHRVGRTGRAGRKGYAYTFVL 657
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.136 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,040,444
Number of Sequences: 27780
Number of extensions: 349082
Number of successful extensions: 1069
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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