Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1898
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    25   0.87 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   3.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.1  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 250 SPYFDVHSNTGMITMKEGTPNGTYLLRFNVTEENE 354
           SP  ++  N G+ T+K  +P     ++F + EE E
Sbjct: 38  SPVVELTENNGLYTLKTTSPFKNTEIKFKLGEEFE 72


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = +1

Query: 322 LLRFNVTEENEPIVAFHWVEATVNVTIKEIPEEAVDKSGSI 444
           L +FNV ++    + ++ ++  +    KEI  E +D   ++
Sbjct: 76  LEKFNVMDKKNGKIRYNLLKKVIPEAFKEIGVEMIDSCSNV 116


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 110 GPIGLSFLSPMTTCSTETPVNLGVPESVIA 21
           G  G  +L+   T S E P N+G+ +  +A
Sbjct: 200 GAFGFLYLNKHFTNSEEAPGNMGLWDQALA 229


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 110 GPIGLSFLSPMTTCSTETPVNLGVPESVIA 21
           G  G  +L+   T S E P N+G+ +  +A
Sbjct: 200 GAFGFLYLNKHFTNSEEAPGNMGLWDQALA 229


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = -2

Query: 238 MKAAT*TSCPVDPSRRGRRQTPYQSPCLVPRPYSYIRRC-HYALVPLDYHSCH 83
           +K  T  SCP  P    R  T      L P P   IR+     L+P    SCH
Sbjct: 610 LKTDTNQSCPSPPVTTKRDGTQETEERLPPLPPKRIRKMPSMPLLPRPI-SCH 661


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 180 KHPTNLRVWCLALIV 136
           KH  N RVW   L+V
Sbjct: 296 KHKNNRRVWLTILLV 310


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 288 YHARVAVDVEVGAS 247
           YH R+  + E+GAS
Sbjct: 948 YHLRIVAENEIGAS 961


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,444
Number of Sequences: 438
Number of extensions: 4624
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)