Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1897
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 33 0.035
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.57
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 29 0.57
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 29 0.75
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 27 1.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.3
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 3.0
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 27 3.0
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 3.0
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 3.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 4.0
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 26 4.0
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 26 5.3
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 25 7.0
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce... 25 7.0
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 25 7.0
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 25 7.0
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 25 9.3
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 9.3
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 25 9.3
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 9.3
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 9.3
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 9.3
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 33.1 bits (72), Expect = 0.035
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Frame = +3
Query: 240 PIVHAAPVEHSSYIHASP---VVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEF 410
P H H ++ P P +H HH P V H+ DH P K+E
Sbjct: 363 PWKHEEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEE 422
Query: 411 SYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQPDG 515
S + H+ + + D ++ Q DG
Sbjct: 423 HCSCHEDHSVHERPSAKGALEDYIQTFVETFQIDG 457
Score = 29.9 bits (64), Expect = 0.33
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Frame = +3
Query: 312 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE-------FSYSVEDPHTG---DHKS-QH 458
P +H HH P V H+ DH P K+E +S PH G DHK +H
Sbjct: 307 PWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPDHKPWKH 366
Query: 459 E--TRDGDVVKG-EYSLLQPDGSIRKGEYTADHHNGFNAIVHN 578
E G ++ +++ +PD K E H + HN
Sbjct: 367 EEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHN 409
Score = 28.3 bits (60), Expect = 1.00
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 312 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 407
P +H HH P V H+ DH P K+E
Sbjct: 195 PWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHE 226
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 312 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 407
P +H HH P + H+ DH P K+E
Sbjct: 280 PWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHE 311
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.57
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +2
Query: 146 AFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPRGTFFVYTCFASSPTLQPCATC 325
+ SSS + PS+ S SST S + ST SY S + +SS TL +
Sbjct: 177 SLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLS 236
Query: 326 SSRAPRCDSN 355
+S P S+
Sbjct: 237 TSSIPSTSSS 246
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 29.1 bits (62), Expect = 0.57
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 147 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPV 263
P Q T+ +P SHAAP+ + P H+ P + A PV
Sbjct: 63 PRKQTTS--SPSFSHAAPLHPLSPPSFTHSQPQIQAQPV 99
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 28.7 bits (61), Expect = 0.75
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +2
Query: 176 PSIESCCSSTDSRSPFDSTCRSYCSRRPRGTFFVYTCFASSPTLQPCATCSSRAPRCDSN 355
PS + C S + +S S S CS+ +G S + C C+S P C SN
Sbjct: 233 PSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSC--CTSEKPSCCSN 290
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 1.7
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +3
Query: 147 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSSYIHASPVVQHFSPVQHA 326
PS+Q ++ P + P A+P +Q P P S I AS + + + ++++
Sbjct: 206 PSNQKPPNFAPGMPAPGPTAVSASPSLQSMPPTNGVIPGAQPS-IEAS-IEKESTSIRNS 263
Query: 327 PVVHHAAI--PIAVEHSDHVEDHAPAK 401
V + + + V S VE P+K
Sbjct: 264 TVTNDRVVNTTVDVSQSQTVETSGPSK 290
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 335 HDWSMLHRAEVLDYWRSMYI 276
+D+S + E +DYW+S+YI
Sbjct: 549 NDYSPMLSYEAIDYWKSLYI 568
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 270 SSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 431
S Y+H VV+ Q P+ H P + SDH + A K F SV++P
Sbjct: 414 SRYLHFWLVVEGLKESQDDPLNAHMIAPFSDIVSDHTDFTAIVKSYFE-SVDNP 466
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 298 SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSR 426
S S C + S + NT +S + LPR++S+ IP++
Sbjct: 181 SGRSIDCQWMDSVALNLSRYYGNTEALSSLPLPRNLSADIPAK 223
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 165 AHYTPVLSHAAPVLTHAAPL 224
A +TPVL H + +L H +PL
Sbjct: 538 AEHTPVLKHTSSLLDHHSPL 557
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 355 LPSNTPIMSKIML--PRSMSSHIPSRIPTPAITSPN 456
+PSNT I S L P S++IP+ +PT + S N
Sbjct: 455 VPSNTTISSSPPLTSPVKTSANIPNLLPTSELDSSN 490
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 4.0
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = -2
Query: 429 DPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG*SVGLLAKHVYTKNVPRGRR 250
D R++ HT RE + + RR+ ESQ+ R ++ + T NV R R
Sbjct: 1440 DNLRSVSRHTRREPQQAQNLNARREHESQKSDRWRQNGNVNRNPRVSNNNST-NVSRERS 1498
Query: 249 EQ*DRHVESKGLRESVLEQHD 187
+ + + R+ V E D
Sbjct: 1499 SEANHRTSNDNKRDEVTEGKD 1519
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 4.0
Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Frame = +3
Query: 129 IVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAG-PI---VHAAPVEHSSYIHASPV 296
I H +PS + + H P T +AP G P+ H A + A P
Sbjct: 270 IYEHSKPSETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAEAKPE 329
Query: 297 VQHFSPVQHAPVVHHAAIP 353
S + AP +P
Sbjct: 330 PVPASAAERAPTSESTTVP 348
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 355 LPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPV 468
+P T + + LP S+ + S+ TP+ ++ T PV
Sbjct: 185 IPEGTALSQRETLPNMGSAQMKSQSRTPSFSNVTTSPV 222
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 372 DHVEDHAPAKYEFSYSVEDPHTGDHKSQHETR 467
D+V++H P E + ++ DH + ++TR
Sbjct: 2 DNVQEHDPDTQEHNNETQNHKQEDHSNSYQTR 33
>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 104
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 197 SSTDSRSPFDSTCRSYCSR 253
S +DS S DS+C S CSR
Sbjct: 80 SDSDSDSDSDSSCSSCCSR 98
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 135 ERCFGKTQHGRGPRL*H 85
+RCFGKT G P L H
Sbjct: 415 KRCFGKTNDGSNPCLYH 431
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 310 ALCNMLQSCTTLR-FQLPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*K 486
+LC+++ S +++ F + M+ LP + S P SPN +P++ +
Sbjct: 33 SLCDIVSSPSSVSSFASSDDFAFMNAYCLPIQQNHQFGS----PVAASPNQQPLVESQNR 88
Query: 487 ANTLYSSLM 513
N Y+SL+
Sbjct: 89 RNVTYASLV 97
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 9.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -3
Query: 353 WNRSVVHDWSMLHRAEVLDYW 291
WN + D+ +L+R+ +D W
Sbjct: 230 WNHAYYKDYGLLNRSRYIDTW 250
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 122 PKHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPR 262
P+H + S G+ PS S S SRSP S R SR R
Sbjct: 113 PRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSR 159
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 152 SSSNGTLYPSIESCCSSTDSRS 217
S S TL +ESC + DSRS
Sbjct: 304 SDSKATLIKIVESCLDAIDSRS 325
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 33 MFFKIAVVCSILAICQGGVIDEGHGHAVSSQSIVRHDEPSHQATAH 170
+ F +A++CS+L GGV+ GH ++ VR PS++A +
Sbjct: 92 LIFIVALICSVLIGVLGGVL--GH------RTAVRDRHPSYKAKTY 129
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = -1
Query: 604 GAACASGSKLCTIALNPLWWSAVYSPLRM---DPSGW 503
GAA G + LW S VY P+ +P+GW
Sbjct: 142 GAAADRGRMFPCMVFMFLWTSIVYDPIAFWTWNPNGW 178
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 324 APVVHHAAIPIAVEHSDHVED 386
+P + + IP++ EHSD VE+
Sbjct: 201 SPEIAKSGIPLSSEHSDDVEE 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,706
Number of Sequences: 5004
Number of extensions: 65447
Number of successful extensions: 267
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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