Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1896
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.8  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   6.8  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    26   6.8  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   6.8  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    26   6.8  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   9.0  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.0  

>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = -2

Query: 483 FFLHITIVFFLNDNFFVFTRVCMFVIYRGFRWYLMVKVNIYWSRLSWHSISSETL 319
           F+ H+    FL+  FF FT   +F+IYR  R+Y++ +  +  S L  +  SS T+
Sbjct: 139 FYAHV----FLSWLFFGFT---IFIIYRELRYYVIFRHAMQSSGLYNNLPSSSTM 186


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 483  FFLHITIVFFLNDNFFVFTRVC 418
            F  + T  FFL D+F  F RVC
Sbjct: 2525 FIKYTTSSFFLTDDFVRFIRVC 2546


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 679  EETCDDSDPEEEIVKTGLIKTVMKATIK 762
            EET +D D  EE+++  L++ +  AT K
Sbjct: 975  EETGEDDDLSEEMIEESLLRHLTYATAK 1002


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 295 LKWPLLYFKFP*CKQRDNVVVNVLW 221
           +KWPL+ FK P   +R  VV    W
Sbjct: 671 IKWPLVRFKLPNGGERTIVVQRETW 695


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 762 LYGSFHNSFNETSLYNFLFWVAIITSFFFLGI 667
           L+GS +NSF E  +   +FW+  I   F  GI
Sbjct: 445 LFGSIYNSFREERV---MFWIFPIAVQFMRGI 473


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 232 NVLWYTHSQTNNQSILIYHIR 170
           +VLWY  S+ ++ S ++YH++
Sbjct: 152 SVLWYLQSELSDVSSVLYHLQ 172


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 425 LVNTKKLSLRKKTIVI*RKNPSL--NHFSNRKYRRNLQRNLTLTTIKAQSIPKLQ 583
           L  T+K+    K  V+ ++N +   N F NR   R+L++NL    ++   +  +Q
Sbjct: 38  LCETRKIEQEIKDQVVQKENKTYFNNKFDNRYKLRDLEKNLAEEEVRITEMLTIQ 92


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
 Frame = -3

Query: 638 K*SLPHLTFVQPTTFNTLPAAWVLIE----------PLWLLGSGFFEDFFGI 513
           K S+P ++F+   ++ T+P  W +++           LWL   GFFE   GI
Sbjct: 179 KPSIPSISFINIRSWRTIPKKWCVLQVLRYFHRILGHLWLY-VGFFESCTGI 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,311
Number of Sequences: 5004
Number of extensions: 57686
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)