Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1896
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0778 + 21459483-21459778,21460531-21462784,21462992-21463432     32   0.58 
07_01_1085 + 9890369-9892114,9892213-9892731                           31   1.3  

>07_03_0778 + 21459483-21459778,21460531-21462784,21462992-21463432
          Length = 996

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 22/85 (25%), Positives = 40/85 (47%)
 Frame = +2

Query: 437 KKLSLRKKTIVI*RKNPSLNHFSNRKYRRNLQRNLTLTTIKAQSIPKLQAMY*MWLVVQT 616
           + +SL      I    P++ H  +R + RN+  N ++TT      P    +   W+V   
Sbjct: 182 RAISLWSPLAAILLMTPAMQHDHSRDFVRNITGNGSITTRTGGFAPTRSTVVAKWIVFLL 241

Query: 617 *DGVMITLWVLLISDQKMPRKKKLV 691
              +++++ V+ IS  K PR  KL+
Sbjct: 242 ---LLVSVLVVTISRLKFPRIIKLL 263


>07_01_1085 + 9890369-9892114,9892213-9892731
          Length = 754

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 730 DQSLQFPLLGRYHHKFLLSWHFLIRYK*YP*SNHYPILRL 611
           D ++QF L+ +  H+F+ SW F   Y  Y   +  P +RL
Sbjct: 436 DYAVQFKLVSKQWHRFIESWSFARGYHMYNNRDRRPKIRL 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,790,300
Number of Sequences: 37544
Number of extensions: 307730
Number of successful extensions: 652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)