Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1895
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    28   1.7  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    28   1.7  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    25   9.1  

>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 331 SN*LMIGRIVRPA--RIATTFLPRKDPSPSLNLKHLGTSKIRLRLRPHVSSGKQRLCGAP 504
           SN +    +V P+  + +   +PRK      N ++ GTS +  +L+P V     R    P
Sbjct: 309 SNYVKSSNVVNPSLSQASLEIIPRKSMKRDSNAQNDGTSTMTSKLKPSVGLSNTRDAPKP 368

Query: 505 G 507
           G
Sbjct: 369 G 369


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 538  LIIRWAVWSKAHNSN--YKM*AFLVKLIELKIRFSFYFTTFYLVAFSSQLYNYLRNLIF 708
            LI+ + +WSKA NSN   +   ++V LIE      F       +    +L   +RN +F
Sbjct: 826  LILDFDLWSKAPNSNLFVQQLGYIVSLIENNDYAGFNVKRLMKMQILKKLLTAMRNCLF 884


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 507 TFRRP*ATVTTHHQVGRMVK 566
           +F+ P  T+ THH VG ++K
Sbjct: 360 SFKGPSQTIKTHHNVGGLLK 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,335
Number of Sequences: 5004
Number of extensions: 55441
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)