Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1895
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016681-12|AAB66170.2|  325|Caenorhabditis elegans Serpentine r...    29   4.8  
Z82285-9|CAB05303.1|  513|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z82264-13|CAB05168.1|  513|Caenorhabditis elegans Hypothetical p...    28   8.5  

>AF016681-12|AAB66170.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein47 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 668 FLVNFTTIYVISFSSHLYNNLSSLIFL 748
           F +NFTTI +I F S+ +NN    + +
Sbjct: 23  FFLNFTTILLIIFKSYKFNNFRFFVLV 49


>Z82285-9|CAB05303.1|  513|Caenorhabditis elegans Hypothetical
           protein T28F3.9 protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 534 TTHHQVGRMVKGPQ*QLQNVSISSQID*IKNKV*FLFYNILSSRI 668
           T H   GR++ G +  LQ VS +++I  IKN    +  + L SRI
Sbjct: 111 TQHVDCGRILNGDKEYLQTVSNNNRIPLIKNSYLNMSCSSLQSRI 155


>Z82264-13|CAB05168.1|  513|Caenorhabditis elegans Hypothetical
           protein T28F3.9 protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 534 TTHHQVGRMVKGPQ*QLQNVSISSQID*IKNKV*FLFYNILSSRI 668
           T H   GR++ G +  LQ VS +++I  IKN    +  + L SRI
Sbjct: 111 TQHVDCGRILNGDKEYLQTVSNNNRIPLIKNSYLNMSCSSLQSRI 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,154,711
Number of Sequences: 27780
Number of extensions: 309913
Number of successful extensions: 602
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)