Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1892
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AC025716-14|AAK39603.1|  227|Caenorhabditis elegans Hypothetical...    29   5.0  
U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone...    28   6.7  
AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear recep...    28   6.7  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    28   6.7  

>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -1

Query: 177 PLYPGDDHGDPAPAQDGEAVAPMAPKNRRPLRLKRITPP 61
           PL+P      P P     +  P A   RRP    R TPP
Sbjct: 671 PLHPETSQSTPTPTTSARSTRPTASVTRRPEFPTRNTPP 709


>AC025716-14|AAK39603.1|  227|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.16 protein.
          Length = 227

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = -1

Query: 330 GCQHGIDAIRRQVLQQERLSG--RQARRQRALDGRRDAPE-P*LAGVERER**PPLYPGD 160
           G Q      + Q  ++++  G  R AR ++A   + +  + P    VE E   PP  P  
Sbjct: 102 GSQRSARLKKEQKSEKKKKEGSQRSARSKKASSEKPEVEKKPEEPPVEDEAKTPPEKPKV 161

Query: 159 DHGDPAPAQDGEAVAPMAPKNRRP 88
           +   PAPA    AVAP  P    P
Sbjct: 162 EEPAPAPAPAPAAVAPAPPPPPEP 185


>U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 107 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 686 FSSLCSLDRCNIWCSFYLSWTLVEETFFS 772
           F+ LC +D+  ++ +FY  W+++E T  +
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLA 196


>AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 686 FSSLCSLDRCNIWCSFYLSWTLVEETFFS 772
           F+ LC +D+  ++ +FY  W+++E T  +
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLA 196


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 686 FSSLCSLDRCNIWCSFYLSWTLVEETFFS 772
           F+ LC +D+  ++ +FY  W+++E T  +
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLA 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,578
Number of Sequences: 27780
Number of extensions: 271760
Number of successful extensions: 997
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)