Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1891
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine r...    28   8.6  
AF016435-3|AAB65879.1|  438|Caenorhabditis elegans Hypothetical ...    28   8.6  

>AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine
           receptor, class z protein78 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +1

Query: 25  SELQPDSNSVTDANCPKIEDVTDFFYFLLILSV*FYIYDYVYVCFDNRAVDK 180
           S L  DS     A    +  +   FYFL++L +  Y + YVY    NR  DK
Sbjct: 4   SGLLDDSEFTEQATLTAVRGLVAIFYFLMLLYLVIYPF-YVYNFKLNRRKDK 54


>AF016435-3|AAB65879.1|  438|Caenorhabditis elegans Hypothetical
           protein F59D6.4 protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -3

Query: 667 VECDSTYLSSYMASTTSLTLRRCRLYET*VNFSIVTKILNDLLLYGTHTVIKKS 506
           V+C+  YLS Y     S  L  C      +  S   +  N  +LYG   +  K+
Sbjct: 78  VDCEDRYLSEYSKIEVSGNLENCGCKGGEIEISTKNQFANCSVLYGGLQIFNKT 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,889,070
Number of Sequences: 27780
Number of extensions: 339100
Number of successful extensions: 656
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)