Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1890
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 29 0.35
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 3.2
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 25 3.2
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 25 4.3
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 4.3
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 5.6
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr... 24 7.4
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 24 7.4
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 9.8
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 24 9.8
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 24 9.8
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 28.7 bits (61), Expect = 0.35
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 151 NIRNRNQVELLSGQTRP-TRASTIFYLFVCNVG 56
N+RNRNQ + + ++P TR S IF + + G
Sbjct: 246 NLRNRNQATITNSNSKPQTRRSKIFVISLLGYG 278
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 3.2
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 229 PIQLIHLFNITQLHKYFYVELIVCGFV*NDQVTYKKKTTTKCLASN 366
P+++IH F ITQ ++ + I F+ N Q++ K K+ L +N
Sbjct: 270 PVRIIHGFEITQNYEQPLLAQI-SEFLFNSQISPKIKSKKNSLITN 314
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 25.4 bits (53), Expect = 3.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +1
Query: 112 DRIVVLPDSCS-*CLIGSLCR--SKIYKLF 192
DR V+LPDSC C++G + +K+ +LF
Sbjct: 244 DRQVILPDSCGYFCIMGEIAMTLTKLRELF 273
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 140 QESGRTTIRSNPSDACFHHFLF 75
+E RTT R NP C H+LF
Sbjct: 389 EEMDRTTPR-NPGSPCISHYLF 409
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.0 bits (52), Expect = 4.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 160 NLSNIRNRNQVELLSGQ 110
NL +RN +QVELL G+
Sbjct: 585 NLQKLRNEHQVELLVGE 601
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 24.6 bits (51), Expect = 5.6
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 140 QESGRTTIRSNPSDACFHHFLFICLQR-RIPLGVTSYD 30
+E GRT IRSN F +++ + PL ++ YD
Sbjct: 518 REHGRTPIRSNTFSPTFDTTIYVVINSLNDPLKLSLYD 555
>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 24.2 bits (50), Expect = 7.4
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 160 SLCRSKIYKLFRKIIQL---EDRFGKPIQLIHLFNITQLHKYFYVE 288
S + K+ L +I+ E+ F + I + N T+LH+ Y+E
Sbjct: 49 SYTKQKVVSLGNRILHATPYEENFLRAIAPVKKLNDTELHQTLYIE 94
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 183 QAIPQNHSIGRQVWETHSID 242
Q I + HSI WE+HS D
Sbjct: 304 QLIDETHSISDISWESHSQD 323
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 95 CFHHFLFICLQRRIPLGVTSYDLNWLA 15
C H F+F ++R I T+ DL W A
Sbjct: 1159 CNHPFIFEDVERAIDPSGTNVDLLWRA 1185
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/43 (23%), Positives = 18/43 (41%)
Frame = -3
Query: 184 CIFYYDTMNLSNIRNRNQVELLSGQTRPTRASTIFYLFVCNVG 56
C+ Y + L + LL+ +T PT ++Y +G
Sbjct: 400 CVIYGIFLTLGEFGPGGNIGLLASKTSPTAIRGVYYGIAAAIG 442
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 28 RSYDVTPSGIRRCRQI-NKKWWKHASDGF 111
RS+D+ IR C I K W+ SD F
Sbjct: 50 RSFDINDVPIRACAFIARKNWFVCGSDDF 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,522,691
Number of Sequences: 5004
Number of extensions: 28749
Number of successful extensions: 71
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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