Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1890
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74027-2|CAA98420.1|  210|Caenorhabditis elegans Hypothetical pr...    30   0.69 
AF324058-1|AAK01419.1|  210|Caenorhabditis elegans Ly-6-related ...    30   0.69 
U88184-5|AAK95876.1|  523|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AF039049-2|AAB94252.2|  297|Caenorhabditis elegans Serpentine re...    27   3.7  
Z75954-3|CAB00108.1|  323|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>Z74027-2|CAA98420.1|  210|Caenorhabditis elegans Hypothetical
           protein C13G3.2 protein.
          Length = 210

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 227 FPNLSSN*MILRNSLYILLRHNEPIKHQEQESGRTTIRSNP 105
           FPNL  +  ++R     +LRH+   + Q Q+ G   +RS P
Sbjct: 89  FPNLPDSTFVVRGCFENILRHSRRAEEQLQQDGCYLLRSLP 129


>AF324058-1|AAK01419.1|  210|Caenorhabditis elegans Ly-6-related
           protein HOT-6 protein.
          Length = 210

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 227 FPNLSSN*MILRNSLYILLRHNEPIKHQEQESGRTTIRSNP 105
           FPNL  +  ++R     +LRH+   + Q Q+ G   +RS P
Sbjct: 89  FPNLPDSTFVVRGCFENILRHSRRAEEQLQQDGCYLLRSLP 129


>U88184-5|AAK95876.1|  523|Caenorhabditis elegans Hypothetical
           protein F36H5.11 protein.
          Length = 523

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 176 LLRHNEPIKHQEQESGRTTIR 114
           +LRH +PI H  Q  GRT I+
Sbjct: 17  VLRHMDPISHITQPDGRTCIK 37


>AF039049-2|AAB94252.2|  297|Caenorhabditis elegans Serpentine
           receptor, class x protein67 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 217 CLPIE*FCGIACIFYYDTMNLSNIRNRNQVELLSGQTRPTRASTIFYLFVCNVGY 53
           C+ I  FC +     YD      I+N  ++  L      T  + IFY ++CNV Y
Sbjct: 96  CISINRFCAVLVPLKYDIW--FTIKNTKKIIALLWIVE-TIIAAIFYQYLCNVFY 147


>Z75954-3|CAB00108.1|  323|Caenorhabditis elegans Hypothetical
           protein F58H1.5 protein.
          Length = 323

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 158 PIKHQEQESGRTTIRSNPSDAC-FHHFLFICLQRRIP 51
           PI+H E     TT+R NP D C  +H + +  Q   P
Sbjct: 171 PIRHSES----TTLRLNPGDGCSAYHTVSVSRQNGCP 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,269,211
Number of Sequences: 27780
Number of extensions: 156510
Number of successful extensions: 445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)