Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1889
(528 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 287 1e-76
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 147 2e-34
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 127 1e-28
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 125 7e-28
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 118 8e-26
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 94 2e-18
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 93 3e-18
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 85 1e-15
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 81 1e-14
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 81 2e-14
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 80 4e-14
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 80 4e-14
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 74 2e-12
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 73 5e-12
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 72 7e-12
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 70 3e-11
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 67 2e-10
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 66 4e-10
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 63 4e-09
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 62 6e-09
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 61 2e-08
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 58 2e-07
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 54 2e-06
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 48 2e-04
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 46 7e-04
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 42 0.012
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 41 0.020
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.035
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 40 0.047
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 39 0.062
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 36 0.76
UniRef50_Q7UL14 Cluster: Putative uncharacterized protein; n=2; ... 34 1.8
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 2.3
UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillar... 34 2.3
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 2.3
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 3.1
UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2; Lactoc... 33 5.4
UniRef50_UPI000023DB34 Cluster: hypothetical protein FG02414.1; ... 32 7.1
UniRef50_Q483P8 Cluster: Putative membrane protein; n=1; Colwell... 32 7.1
UniRef50_UPI0000660030 Cluster: Homolog of Homo sapiens "Homo sa... 32 9.4
UniRef50_A3WXM7 Cluster: PAS sensor Signal Tranduction Histidine... 32 9.4
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 287 bits (703), Expect = 1e-76
Identities = 138/149 (92%), Positives = 138/149 (92%)
Frame = +2
Query: 80 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 259
STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGT
Sbjct: 25 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGT 84
Query: 260 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 439
RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG
Sbjct: 85 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 144
Query: 440 ILPSGLLLVTGPFAFNSCPLRRIPQRYVI 526
ILPSGLLLVTGPFAFNSCPLRRIPQRYVI
Sbjct: 145 ILPSGLLLVTGPFAFNSCPLRRIPQRYVI 173
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 147 bits (356), Expect = 2e-34
Identities = 76/147 (51%), Positives = 95/147 (64%)
Frame = +2
Query: 86 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 265
K P N L G++R+SK++M+ ++A Y+ VK+IGG KNGG RT
Sbjct: 19 KHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERT 78
Query: 266 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 445
V LK+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL+ +L
Sbjct: 79 VFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVL 138
Query: 446 PSGLLLVTGPFAFNSCPLRRIPQRYVI 526
SGLLLVTGPFA NSCPLRR+ QRYVI
Sbjct: 139 ASGLLLVTGPFALNSCPLRRVSQRYVI 165
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 127 bits (307), Expect = 1e-28
Identities = 68/150 (45%), Positives = 91/150 (60%), Gaps = 6/150 (4%)
Frame = +2
Query: 95 RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTR 262
RN L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 263 TVPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 436
V L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRVV +
Sbjct: 106 VVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFL 165
Query: 437 GILPSGLLLVTGPFAFNSCPLRRIPQRYVI 526
L SGLLLVTGP N PLRR Q++VI
Sbjct: 166 KQLASGLLLVTGPLVLNRVPLRRTHQKFVI 195
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 125 bits (301), Expect = 7e-28
Identities = 67/147 (45%), Positives = 89/147 (60%), Gaps = 2/147 (1%)
Frame = +2
Query: 92 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVP 271
P+N+ L GV FS+SKMFHK+ +K V VK++ GEKNGG R +P
Sbjct: 25 PKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
Query: 272 LKRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 445
LK+ + YPT++ + + +S +P S+ +R + GTV ILLAG H GKRVV + L
Sbjct: 85 LKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQL 144
Query: 446 PSGLLLVTGPFAFNSCPLRRIPQRYVI 526
+GLL VTGP+ N CPLRRI Q YVI
Sbjct: 145 KTGLLPVTGPYGVNGCPLRRINQIYVI 171
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 118 bits (284), Expect = 8e-26
Identities = 66/144 (45%), Positives = 86/144 (59%)
Frame = +2
Query: 95 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 274
RN +L G+ R+S+S ++ K+A YK T K IGG+KNGG R VP+
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 275 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 454
+R +YPT++ +R R + ++R ++ GTV ILLAG H GKRVV + L SG
Sbjct: 70 QRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVFLKQLNSG 127
Query: 455 LLLVTGPFAFNSCPLRRIPQRYVI 526
LLLVTGPF N PLRRIPQ YVI
Sbjct: 128 LLLVTGPFKINGVPLRRIPQSYVI 151
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 94.3 bits (224), Expect = 2e-18
Identities = 49/103 (47%), Positives = 67/103 (65%)
Frame = +2
Query: 218 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCIL 397
V+ K+IGG+KNGGTR V ++ FYP + + +K+ +IR +L+ GT+ IL
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILIL 103
Query: 398 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 526
LAG + GKRVVL+ L SGLLLV+GP N PLRR+ Q+ VI
Sbjct: 104 LAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKLVI 146
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 93.5 bits (222), Expect = 3e-18
Identities = 49/105 (46%), Positives = 65/105 (61%)
Frame = +2
Query: 212 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVC 391
+ ++ K IGG KNGG R VP K+ +YP +K + K + +RP++K GT+
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIV 78
Query: 392 ILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 526
ILLAG G RVV++ L SG LLVTGP+A N PL R+ QRYVI
Sbjct: 79 ILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVI 123
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 84.6 bits (200), Expect = 1e-15
Identities = 47/89 (52%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Frame = +2
Query: 269 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 439
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 440 ILPSGLLLVTGPFAFNSCPLRRIPQRYVI 526
L SGLLLVTGPF +N PLRR+ Q YVI
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRVNQCYVI 142
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 81.4 bits (192), Expect = 1e-14
Identities = 40/63 (63%), Positives = 46/63 (73%)
Frame = +2
Query: 338 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 517
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 518 YVI 526
YVI
Sbjct: 146 YVI 148
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 81.0 bits (191), Expect = 2e-14
Identities = 45/87 (51%), Positives = 57/87 (65%)
Frame = +2
Query: 266 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 445
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 446 PSGLLLVTGPFAFNSCPLRRIPQRYVI 526
SGLLLVTGPF+FN PLRR+ RYVI
Sbjct: 69 KSGLLLVTGPFSFNGVPLRRVNSRYVI 95
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 79.8 bits (188), Expect = 4e-14
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Frame = +2
Query: 215 TVVVKQIGGEKN--GGTRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVRRIRPNLKIG 382
T+ K +G K G R +P +K+ +YP ++ + + + H ++RP+L+ G
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPG 61
Query: 383 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 526
T+ ILLAGR GKRV+L+ L G+LLVTGPF N PLRR+ RYVI
Sbjct: 62 TILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYVI 109
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 79.8 bits (188), Expect = 4e-14
Identities = 53/149 (35%), Positives = 77/149 (51%)
Frame = +2
Query: 80 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 259
+ K RN DL GV ++S+S+M+HK+ + + V
Sbjct: 7 TAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV------------ 54
Query: 260 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 439
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV +
Sbjct: 55 -DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLK 111
Query: 440 ILPSGLLLVTGPFAFNSCPLRRIPQRYVI 526
L SGLLLVTGPF N PLRR+ Q YVI
Sbjct: 112 QLASGLLLVTGPFKINGVPLRRVNQAYVI 140
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 73.7 bits (173), Expect = 2e-12
Identities = 42/91 (46%), Positives = 55/91 (60%)
Frame = +2
Query: 254 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 433
G R + K K +IR+++ + K +R ++ GTV I+LAGR AGKRVV
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVVA 111
Query: 434 VGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 526
+ L SGL+L+TGPF N PLRRI QRYVI
Sbjct: 112 LKQLDSGLILITGPFKVNGVPLRRIDQRYVI 142
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 72.5 bits (170), Expect = 5e-12
Identities = 35/71 (49%), Positives = 48/71 (67%)
Frame = +2
Query: 314 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 493
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 494 PLRRIPQRYVI 526
P+RR+ Y+I
Sbjct: 80 PVRRVNPAYII 90
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 72.1 bits (169), Expect = 7e-12
Identities = 41/80 (51%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = +2
Query: 290 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 466
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 467 TGPFAFNSCPLRRIPQRYVI 526
TGPF N P+RR+ Q YVI
Sbjct: 110 TGPFKINGVPIRRVNQPYVI 129
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 70.1 bits (164), Expect = 3e-11
Identities = 38/67 (56%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Frame = +2
Query: 332 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 505
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 506 IPQRYVI 526
+ RYVI
Sbjct: 84 VNARYVI 90
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 67.3 bits (157), Expect = 2e-10
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Frame = +2
Query: 221 VVKQIGGEKNGGTRTVPLKRRKSFYPTQEK--IRASSGGRPFS---KHV--RRIRPNLKI 379
VV G +KN V ++K P + K I GR + K V R++R ++++
Sbjct: 17 VVPATGDKKNALKHYVIKGQKKILTPVRAKKTISKKHYGRKLASKKKFVVQRKMRSSIQV 76
Query: 380 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 526
G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R+ RY+I
Sbjct: 77 GKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLI 125
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 66.5 bits (155), Expect = 4e-10
Identities = 36/57 (63%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +2
Query: 359 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVI 526
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVI 123
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 62.9 bits (146), Expect = 4e-09
Identities = 35/84 (41%), Positives = 52/84 (61%)
Frame = +2
Query: 275 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 454
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 455 LLLVTGPFAFNSCPLRRIPQRYVI 526
LL++GPF N PLRR+ RYVI
Sbjct: 62 TLLISGPFKVNGVPLRRVNARYVI 85
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 62.5 bits (145), Expect = 6e-09
Identities = 45/144 (31%), Positives = 70/144 (48%)
Frame = +2
Query: 95 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 274
RN L G R+S ++ +K Y + + V+K + G+KNGGT V L
Sbjct: 49 RNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKL 106
Query: 275 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 454
++ K + + + + S P KH + + N TV I++ G+H +RVV + L G
Sbjct: 107 QKMKMYLGSCKAMAKS----PAFKHEKAVC-NSTPETVLIIITGQH--RRVVFLKQLSRG 159
Query: 455 LLLVTGPFAFNSCPLRRIPQRYVI 526
LL+TGP A N L R Q+ V+
Sbjct: 160 FLLITGPLALNLVLLYRTHQKSVV 183
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 60.9 bits (141), Expect = 2e-08
Identities = 36/72 (50%), Positives = 44/72 (61%)
Frame = +2
Query: 311 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNS 490
+R RP + +R+I P G V ILL+GR GKRVV + L SGLLLVTGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 491 CPLRRIPQRYVI 526
PL+R+ YVI
Sbjct: 98 VPLKRVNSAYVI 109
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 57.6 bits (133), Expect = 2e-07
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +2
Query: 383 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 526
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+ Q VI
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVI 60
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 54.4 bits (125), Expect = 2e-06
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +2
Query: 359 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVI 526
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI RYVI
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVI 85
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 47.6 bits (108), Expect = 2e-04
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = +2
Query: 362 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 526
RP+LK+GTV I++ G H GKR V+V +G++ + GP P+ I Q Y+I
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PVNEISQDYLI 103
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 45.6 bits (103), Expect = 7e-04
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = +2
Query: 419 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 526
KRVV + L SGLLL+TG F N PLRR+ Q YVI
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQAYVI 191
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 41.5 bits (93), Expect = 0.012
Identities = 27/74 (36%), Positives = 40/74 (54%)
Frame = +2
Query: 305 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 484
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 485 NSCPLRRIPQRYVI 526
N PL RI +RY++
Sbjct: 65 NGIPLFRIDERYLL 78
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 40.7 bits (91), Expect = 0.020
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +2
Query: 365 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYV 523
P + +G + +++AGR AG++VV+V I+ +LVTG N RR+ +++
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHI 53
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.035
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 362 RPNLKIGTVCILLAGRHAGKRVVLVGILP 448
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 39.5 bits (88), Expect = 0.047
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 365 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 508
P +++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 39.1 bits (87), Expect = 0.062
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +2
Query: 290 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 469
FYP + ++ + +K ++ +R ++ GTV I+LAGR VV + L SGLLL+T
Sbjct: 207 FYPADD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQLSSGLLLIT 259
Query: 470 GPFAFNSCP 496
G F N P
Sbjct: 260 GSFKINDVP 268
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 35.5 bits (78), Expect = 0.76
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 371 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 508
+ IG V + + GR AG++ V+V I+ +++TGP RR+
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRV 50
>UniRef50_Q7UL14 Cluster: Putative uncharacterized protein; n=2;
Bacteria|Rep: Putative uncharacterized protein -
Rhodopirellula baltica
Length = 84
Score = 34.3 bits (75), Expect = 1.8
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = -3
Query: 181 FANELVFSLLV--EHLGFGETHHSVAQIIVPRFFR----RFFLSHRTCRCGSRLGRRF 26
FA EL FS++ EH+G T + P+ FR RF + R+CR G+R RRF
Sbjct: 20 FAGEL-FSVIARCEHIGGPNTDVDRRAVFWPKIFRFAAGRFQSTFRSCRVGARYSRRF 76
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 2.3
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 329 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 487
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillardia
theta|Rep: 60S ribosomal protein L6B - Guillardia theta
(Cryptomonas phi)
Length = 169
Score = 33.9 bits (74), Expect = 2.3
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 368 NLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 526
+ KIG + I+ + GK+ V +G G LL++G FN +I +YV+
Sbjct: 41 DFKIGDILIIKKRNNYGKKCVFLGHTDDGNLLLSGIMKFNGIGYLKIHWKYVV 93
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 2.3
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 245 KNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 376
K R LK SF P + + ASS GRP K +R+R LK
Sbjct: 128 KEDHNREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 3.1
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 444 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 310
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2;
Lactococcus lactis subsp. cremoris|Rep:
Cation-transporting ATPase - Lactococcus lactis subsp.
cremoris (strain MG1363)
Length = 841
Score = 32.7 bits (71), Expect = 5.4
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 422 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 517
+++++GI+P +L++ F F+S L IPQR
Sbjct: 215 KIIVIGIIPISILVLLNQFVFSSLDLSVIPQR 246
>UniRef50_UPI000023DB34 Cluster: hypothetical protein FG02414.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG02414.1 - Gibberella zeae PH-1
Length = 607
Score = 32.3 bits (70), Expect = 7.1
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +2
Query: 272 LKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCI--LLAGRHAGKRVVLVGIL 445
L+ R +F P+Q KI + F++HV R+R NL+I I L+A + GK V+ GIL
Sbjct: 431 LESRDAF-PSQIKIPCKAELASFTRHVERVRKNLEIRVTQIESLIAWLNEGK-VLFDGIL 488
>UniRef50_Q483P8 Cluster: Putative membrane protein; n=1; Colwellia
psychrerythraea 34H|Rep: Putative membrane protein -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 249
Score = 32.3 bits (70), Expect = 7.1
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 471 PVTKSRPLGRIPTSTTLLPA-CLP-ARRMQTVPIFRLGRILRTCLL 340
P TK G IP + T P+ C P A R+ V ++ +GRI CL+
Sbjct: 41 PTTKESLQGDIPVNVTSAPSGCSPQASRLNLVFLYHVGRIASYCLI 86
>UniRef50_UPI0000660030 Cluster: Homolog of Homo sapiens "Homo
sapiens mRNA related with psoriasis, complete cds; n=3;
Clupeocephala|Rep: Homolog of Homo sapiens "Homo sapiens
mRNA related with psoriasis, complete cds - Takifugu
rubripes
Length = 113
Score = 31.9 bits (69), Expect = 9.4
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 427 CTCWNSAQRSAFSYWTF-CFQFVPATPYSSALC 522
C CW+ + F++W F CF + A LC
Sbjct: 25 CDCWSDLPQCCFAFWCFPCFACITAREAGECLC 57
>UniRef50_A3WXM7 Cluster: PAS sensor Signal Tranduction Histidine
Kinase; n=1; Nitrobacter sp. Nb-311A|Rep: PAS sensor
Signal Tranduction Histidine Kinase - Nitrobacter sp.
Nb-311A
Length = 182
Score = 31.9 bits (69), Expect = 9.4
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 347 HVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 487
H R +RP LK+ L +A ++ G L G+ L+T PF+FN
Sbjct: 129 HARALRPKLKV-----LFTTGYARNAIIHHGRLDKGVQLITKPFSFN 170
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 521,019,536
Number of Sequences: 1657284
Number of extensions: 10304300
Number of successful extensions: 27124
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 26253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27086
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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