Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1888
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 50 5e-07
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 38 0.001
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 35 0.015
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 33 0.062
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 31 0.14
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 31 0.19
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 31 0.25
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 30 0.33
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 30 0.44
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz... 29 0.77
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 29 1.0
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.3
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 28 1.3
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 27 2.3
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 27 3.1
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 27 3.1
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 3.1
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 27 3.1
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 27 3.1
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 27 3.1
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 5.4
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 26 7.1
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 26 7.1
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 7.1
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 7.1
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 25 9.4
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 25 9.4
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 25 9.4
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 9.4
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 25 9.4
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 25 9.4
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 49.6 bits (113), Expect = 5e-07
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Frame = +2
Query: 359 VNCPICNRSFENTEIEEHVNKCLFLNSCEKS------NSKRQGQQLLSPNEKRKKVEKLT 520
V CP+C ++ +I H++ +S +R L + + K
Sbjct: 7 VQCPVCAKTVTMNDINPHLDSHYSDSSGPSKPVSPFFKKERYKHHLETNVSSHQSATKFI 66
Query: 521 ALPPNLKSSQSQKISTNENIKIPLSESLRPKSLDQIVGQKQSFGTDSMLRSMLEQNKIPN 700
P S ++K PL+E RPKSLD+ VGQ++ G ++R+++EQ++ +
Sbjct: 67 EPEP----SPTKKTKLTRRDTRPLAERARPKSLDEYVGQEELVGERGIIRNLIEQDRCNS 122
Query: 701 MIFVGSTRLRKDVISK 748
MI GS K +++
Sbjct: 123 MILWGSAGTGKTTLAR 138
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
LWG G GKT+LA +I+
Sbjct: 125 LWGSAGTGKTTLARLIA 141
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 38.3 bits (85), Expect = 0.001
Identities = 25/64 (39%), Positives = 34/64 (53%)
Frame = +2
Query: 527 PPNLKSSQSQKISTNENIKIPLSESLRPKSLDQIVGQKQSFGTDSMLRSMLEQNKIPNMI 706
P N K+ Q K S IP E RPK+LDQ+ Q+ T +L+ L N +P+M+
Sbjct: 6 PRNKKTEQEAKKS------IPWVELYRPKTLDQVSSQE---STVQVLKKTLLSNNLPHML 56
Query: 707 FVGS 718
F GS
Sbjct: 57 FYGS 60
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 34.7 bits (76), Expect = 0.015
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
LWGPPGCGKT LA ++
Sbjct: 531 LWGPPGCGKTLLAKAVA 547
Score = 31.9 bits (69), Expect = 0.11
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L GPPGCGKT LAN ++
Sbjct: 213 LHGPPGCGKTMLANALA 229
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 32.7 bits (71), Expect = 0.062
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +2
Query: 470 QQLLSPNEKRKKVEKLTALPPNLKSSQSQKISTNENIKIPLSESL----RPKSLDQIVGQ 637
+++L ++ K+++K A +S S++ S + IK PLS SL PK ++IVG
Sbjct: 210 EKMLFEEKRAKRIKKQGAST----ASSSREASLDSTIKQPLSASLLESSEPKEKEEIVGS 265
Query: 638 KQSFGTD 658
+ GTD
Sbjct: 266 LEEEGTD 272
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 31.5 bits (68), Expect = 0.14
Identities = 32/119 (26%), Positives = 52/119 (43%)
Frame = +2
Query: 353 KTVNCPICNRSFENTEIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKLTALPP 532
+TV C +C+ +N E H CL ++ E ++ LL NE+R ++ L
Sbjct: 180 ETVLCRVCDHEIQNWYFEHHTELCLLIHHAEA--RAQEANDLL--NEQRNALQSL----- 230
Query: 533 NLKSSQSQKISTNENIKIPLSESLRPKSLDQIVGQKQSFGTDSMLRSMLEQNKIPNMIF 709
L S Q + +PL+ L P S I +S S+ + + +N I NM+F
Sbjct: 231 -LDSLDDQIEPDVSYLGVPLAAVL-PSS---ITSSAKSNSRSSLSQKI--RNYISNMLF 282
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 31.1 bits (67), Expect = 0.19
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L+GPPGCGKT LA ++
Sbjct: 130 LYGPPGCGKTMLAKALA 146
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 30.7 bits (66), Expect = 0.25
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 167 FWKNLRPNVQRIYF-TFPPSSVISALSEILNS 75
FW+ LR V ++ T PP VI+ LSEI+ +
Sbjct: 167 FWQPLRVYVDMVFLHTLPPRQVINGLSEIIKT 198
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 30.3 bits (65), Expect = 0.33
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Frame = +2
Query: 380 RSFENTEIEEHVNKCLFLNSCEKSNS--KRQGQQLLSPNEKRKK-VEKLTALPPNLKSSQ 550
R+ EN E H N + + + SN+ R L+P E+ K VE PP KSS+
Sbjct: 539 RAKENEE-GNHSNATCTIKNDDLSNTLNNRAANTKLNPKEEDKSTVESELKAPPKEKSSE 597
Query: 551 SQKISTNENIKIPLSESLRPKSLDQIVGQKQSFGTDSMLRSMLEQNKIPNMIFVGSTRLR 730
+ K NE + R S D+I K++F D+ + + +Q I + LR
Sbjct: 598 TSKEYLNEPSVVKDFVVERTPS-DKISESKEAF--DAKVEEISDQRAISQRYY----ELR 650
Query: 731 KDVI 742
K +I
Sbjct: 651 KKMI 654
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 29.9 bits (64), Expect = 0.44
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +2
Query: 359 VNCPICNRSFENTEIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKLTALPPNL 538
V+CP C+ + +I +H++ CL S S+S N+ K L + +
Sbjct: 157 VHCPACSNLVPHNQINQHLDSCLNSPSSPSSSSSPY------KNKDNSKSNSLLSFKTDD 210
Query: 539 KSSQSQKI-STNENIKIPLSESLR-PK 613
S +++ S N ++PL + +R PK
Sbjct: 211 DSITKRRLRSFNSADELPLKDRVRLPK 237
>SPCC553.07c |mug40||DinB translesion DNA repair
polymerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 29.1 bits (62), Expect = 0.77
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 356 TVNCPICNRSFENT--EIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKL 517
TV CP+C ++ EN + +HV+ CL + E S +P K++K L
Sbjct: 489 TVPCPVCQKNIENELGILNQHVDLCL---NVETVKSLINTDHTANPTIKKRKSNTL 541
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L+G PGCGKT LA+ IS
Sbjct: 645 LFGYPGCGKTYLASAIS 661
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 28.3 bits (60), Expect = 1.3
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Frame = -3
Query: 633 PTIWSRDFGLKDSDRGIFMFSFVLIFCDC----ELFKFGGKAVNFSTFFLFSFGDNSCCP 466
P W+ DF LK++ IF+ V + DC L K K F+ NS P
Sbjct: 766 PEGWNFDFRLKNARVSIFLDDDVSLLLDCGGFTTLKKTEKKYAEMHAKFIQIHTKNSDVP 825
Query: 465 CL-----------FELDFSQELRKRHLFTCSSISV 394
L ++L +L K H TCS IS+
Sbjct: 826 TLWDRFLALGNVRYQLKDLSDLEKLHQVTCSYISI 860
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 156 VLPKSALKKSY-SNITTILPSLFIPSPFFVSS 248
VLP ++ SY SN T LPS F PSP S
Sbjct: 285 VLPPASTFPSYNSNFTGFLPSSFNPSPLMTLS 316
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/76 (25%), Positives = 38/76 (50%)
Frame = +2
Query: 458 KRQGQQLLSPNEKRKKVEKLTALPPNLKSSQSQKISTNENIKIPLSESLRPKSLDQIVGQ 637
KR +QLL+ + KKV + N S + +++ I LS+ ++P++ ++G
Sbjct: 229 KRLDEQLLNSVKSMKKVSQQLKPQKNTNDSNNDHTLLSQDQLIELSKLVKPRTKLLLLGP 288
Query: 638 KQSFGTDSMLRSMLEQ 685
+S G ++L + Q
Sbjct: 289 PKS-GKKTLLSRLFFQ 303
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L+GPPG GKT LA ++
Sbjct: 171 LYGPPGTGKTLLARAVA 187
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L+GPPG GKT LA ++
Sbjct: 184 LYGPPGTGKTLLARAVA 200
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L+GPPG GKT LA ++
Sbjct: 497 LFGPPGTGKTMLARAVA 513
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L+GPPGC KT A I+
Sbjct: 587 LYGPPGCSKTITAKAIA 603
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L+GPPG GKT LA ++
Sbjct: 693 LYGPPGTGKTLLAKAVA 709
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L+GPPG GKT LA ++
Sbjct: 417 LFGPPGTGKTMLARAVA 433
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 446 KSNSKRQGQQLLSPNEKRKKVEKLTALPPNLKSSQSQKISTNENIKIPLSES 601
K +K+ + +SP + +K+ ++ ++ P+ KS + QK S + SES
Sbjct: 38 KEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESES 89
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L+GPPG GKT L ++
Sbjct: 173 LYGPPGTGKTMLVKAVA 189
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 341 SDCTKTVNCPICNRSFENTEIEE--HVNKCLFLNSCEKSNSK 460
S ++ + CPIC + E+ ++ HVN CL + E + K
Sbjct: 101 STMSELLLCPICGITLESLTVDANIHVNDCLDGRTTEAVSKK 142
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 7.1
Identities = 23/112 (20%), Positives = 46/112 (41%)
Frame = +2
Query: 392 NTEIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKLTALPPNLKSSQSQKISTN 571
NT++ + L + + +K + Q+L N+ ++ EKL K+ +K+S++
Sbjct: 1077 NTQMLAMLACVLDIPNPKKQSGNTSADQVLF-NQPKQVTEKLGVQLNLPKTKILEKVSSH 1135
Query: 572 ENIKIPLSESLRPKSLDQIVGQKQSFGTDSMLRSMLEQNKIPNMIFVGSTRL 727
+I PK D +++ F S + L N FV + +
Sbjct: 1136 SLAQITALREKEPKDADSTYSKEKIFSATSTVHLQLMDYDKQNNDFVDAQEI 1187
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L GPPG GKT LA ++
Sbjct: 305 LTGPPGTGKTMLARAVA 321
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L+GPPG GK+ LA ++
Sbjct: 167 LYGPPGTGKSYLAKAVA 183
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/58 (24%), Positives = 22/58 (37%)
Frame = +2
Query: 329 DKNMSDCTKTVNCPICNRSFENTEIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRK 502
+K+ D T+ C +C + F + E K N K + NEK+K
Sbjct: 233 EKDGKDSTEAFYCEVCQKFFGKITVFEAHKKSKAHNKAVKRMQSSSPSTTSNTNEKQK 290
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVI 755
L+GPPG GKT +A I
Sbjct: 309 LYGPPGTGKTLIARQI 324
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
++GPPG GKT +A ++
Sbjct: 263 MYGPPGTGKTLMARAVA 279
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 711 WGPPGCGKTSLANVIS 758
+GPPG GKT LA I+
Sbjct: 537 FGPPGTGKTLLAKAIA 552
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 197 YITIRLFQCTFWKNLRPNVQRIYFTFPPSSVISALSEILNS 75
++ + Q FWK +RPN + + S V +AL NS
Sbjct: 92 HLAFLIQQDDFWKGIRPNPTQNNLKYALSYVTNALFHFDNS 132
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 8/39 (20%)
Frame = -3
Query: 372 IGQFTVFVQSLIFLS---FQFYEPGE-----ETFKPSLI 280
+GQF + + +LI+++ + + +P E ETFKPSL+
Sbjct: 1065 LGQFAIHIVTLIYITRVVYLYEDPLEKVDLEETFKPSLL 1103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,955
Number of Sequences: 5004
Number of extensions: 68918
Number of successful extensions: 289
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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