Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1888
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0065 + 549972-550770,551577-552190,552392-552544,552769-55... 31 0.80
04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990... 31 0.80
02_05_0922 - 32742863-32742958,32743081-32743136,32743253-327433... 31 1.1
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 30 1.8
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 30 1.8
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 30 2.4
04_04_0918 - 29411239-29411373,29412276-29412526,29412772-294130... 30 2.4
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 30 2.4
08_02_0657 - 19749835-19751942,19753123-19753561 29 3.2
06_01_0241 - 1827161-1827624,1829688-1829828,1830566-1830593,183... 29 3.2
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 29 5.6
11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767... 29 5.6
01_01_0171 + 1446221-1446902,1447040-1447221,1447339-1447409,144... 29 5.6
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576... 28 7.4
06_03_1386 + 29816744-29816941,29817030-29817330,29817421-298175... 28 9.8
04_04_0919 - 29422003-29422267,29422411-29422660,29423163-294234... 28 9.8
>06_01_0065 +
549972-550770,551577-552190,552392-552544,552769-552885,
552972-553076,553269-553334,553430-553494,553577-553778,
554026-554169,554212-554340
Length = 797
Score = 31.5 bits (68), Expect = 0.80
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L GPPGCGKT+LA+ I+
Sbjct: 230 LHGPPGCGKTTLAHAIA 246
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L+GPPGCGKT +A ++
Sbjct: 534 LFGPPGCGKTLIAKAVA 550
>04_04_1163 -
31398565-31398654,31398729-31398812,31398893-31399037,
31399118-31399239,31399338-31399376,31399491-31399601,
31399682-31399804,31399946-31400032,31400136-31400207,
31400349-31400621,31400704-31400895,31400988-31401171,
31401339-31401480,31401578-31401821,31401959-31402603,
31403024-31403293
Length = 940
Score = 31.5 bits (68), Expect = 0.80
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 648 LAQIQCSDRCLNKTRFLT*FLWGPPGCGKTSLANVIS 758
+A C L K +F T FL+GP GCGK ++ ++
Sbjct: 363 IAPALCPSNILPKVKFST-FLYGPSGCGKRTVVKHVA 398
>02_05_0922 -
32742863-32742958,32743081-32743136,32743253-32743382,
32743768-32743849,32744038-32744227,32744290-32744369,
32744769-32744985,32745740-32745923
Length = 344
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 633 DKSNHLAQIQCSDRCLNKTRFLT*FLWGPPGCGKTS 740
D + H + DR N+ R L+GPPG GKTS
Sbjct: 51 DVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTS 86
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 329 DKNMSDCTKTVNCPICNRSFENTEIEEHVNKCLFLNSCEKSNSKRQGQ-QLLSPNEKRKK 505
+ ++ C +T+ C S +EE +K L++CEKSNS + Q + ++ + K +
Sbjct: 753 EMELAKCNETIECRKLEFSLMEKNMEELTSK---LSACEKSNSLTETQLKCMAESYKSLE 809
Query: 506 VEKL 517
+ KL
Sbjct: 810 LHKL 813
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 630 LDKSNHLAQIQCSDRCLNKTRFLT*FLWGPPGCGKTSLANVI 755
L+KS +A + C ++ + +WGPPG GKT + +
Sbjct: 265 LNKSQKVAVLDCVSAMQQRSSSVR-LIWGPPGTGKTKTISTL 305
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 711 WGPPGCGKTSLANVIS 758
+GPPGCGKT LA I+
Sbjct: 532 YGPPGCGKTLLAKAIA 547
>04_04_0918 -
29411239-29411373,29412276-29412526,29412772-29413009,
29413133-29414251,29414540-29415106
Length = 769
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 621 TRSLDKSNHLAQIQC-SDRCLNKTRFLT*FLWGPPGCGKTSLANVI 755
T L+ S + A + C S N + +WGPPG GKT +V+
Sbjct: 214 TMDLNNSQNDAILNCISSMHSNNSSSSFSLIWGPPGTGKTKTISVL 259
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 711 WGPPGCGKTSLANVIS 758
+GPPGCGKT LA I+
Sbjct: 523 YGPPGCGKTLLAKAIA 538
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 711 WGPPGCGKTSLANVIS 758
+GPPGCGKT +A I+
Sbjct: 529 YGPPGCGKTMMAKAIA 544
>06_01_0241 -
1827161-1827624,1829688-1829828,1830566-1830593,
1830639-1830728
Length = 240
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 329 DKNMSDCTKTVNCPICNRSFENTEIEEHVN-KCLF--LNSCEKSNSKRQG 469
++++S TKTVNC I I H N C+F L + +S+ KR+G
Sbjct: 10 EQSLSVYTKTVNCSIIRAPAMTRLIVNHFNDTCIFHSLGAATESHYKRRG 59
>12_01_0833 -
7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +3
Query: 639 SNHLAQIQCSDRC--LNKTRFLT*FLWGPPGCGKTSLANVIS 758
S+H +++Q + + K +T L GPPGCGKT+L ++
Sbjct: 12 SHHQSKVQILENVSGIIKPSRIT-LLLGPPGCGKTTLLKALA 52
>11_02_0042 -
7672565-7672729,7672902-7672977,7673409-7674132,
7674684-7674708,7675041-7675486,7676643-7676862,
7677609-7678459,7678697-7679555
Length = 1121
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 590 LSESLRPKSLDQIVGQKQSFGTDSMLRSMLEQNKIPNMIFVG 715
LS+ RP+S +++VG QSF S+ +++ + P +F G
Sbjct: 337 LSQKYRPRSFNELVG--QSFVVQSLNNAIIRERIAPAYLFHG 376
>01_01_0171 +
1446221-1446902,1447040-1447221,1447339-1447409,
1447480-1447486,1447530-1447619,1447694-1447981,
1448121-1448333,1448860-1449087
Length = 586
Score = 28.7 bits (61), Expect = 5.6
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = +2
Query: 398 EIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKLTALPPNLKSSQSQKISTNEN 577
E+E N+ S E+ +R+ QQL + NE+ +K++ L +++K+ ++
Sbjct: 199 ELESQYNETTA--SLERVMEQRE-QQLQAYNEEIRKMQDLALRHSQRIMDENKKLRSDLE 255
Query: 578 IKIPLSESLRPKSLDQIVGQKQS 646
K+ L +S R K LD++ Q S
Sbjct: 256 SKMQLLDS-RSKELDKLAVQSNS 277
>11_06_0557 -
24955837-24956214,24957225-24957395,24957576-24957635,
24958419-24958623,24958710-24958953,24959103-24959394,
24959734-24960828,24960915-24961409,24961665-24961823,
24961893-24962387
Length = 1197
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 708 LWGPPGCGKTSLA 746
+WGPPG GKT LA
Sbjct: 433 VWGPPGTGKTRLA 445
>06_03_1386 +
29816744-29816941,29817030-29817330,29817421-29817579,
29818916-29819211,29819534-29819761
Length = 393
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L+GPPG GKT LA I+
Sbjct: 124 LYGPPGTGKTMLAKAIA 140
>04_04_0919 -
29422003-29422267,29422411-29422660,29423163-29423481,
29423625-29424794,29424879-29425388,29425449-29425607
Length = 890
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVI 755
+WGPPG GKT +V+
Sbjct: 283 IWGPPGTGKTKTISVL 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,911,354
Number of Sequences: 37544
Number of extensions: 367250
Number of successful extensions: 1183
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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