Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1888
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr... 36 0.044
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 33 0.31
Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical pr... 31 0.95
Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical pr... 31 0.95
U41540-5|AAK39229.2| 666|Caenorhabditis elegans Hypothetical pr... 31 1.3
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 31 1.3
U97193-4|AAB52439.1| 691|Caenorhabditis elegans Hypothetical pr... 30 1.7
U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 30 2.2
Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 29 2.9
AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein. 29 2.9
AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival... 29 2.9
AC025726-36|AAL27268.1| 487|Caenorhabditis elegans Hypothetical... 29 2.9
AC025726-35|AAL27267.1| 489|Caenorhabditis elegans Hypothetical... 29 2.9
Z78544-2|CAB01758.1| 368|Caenorhabditis elegans Hypothetical pr... 29 3.8
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 3.8
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 3.8
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 3.8
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 3.8
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 29 3.8
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 29 3.8
Z81489-9|CAE17759.1| 326|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical ... 28 6.7
>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
T20F7.5 protein.
Length = 1065
Score = 35.5 bits (78), Expect = 0.044
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Frame = +2
Query: 326 KDKNMSD-CTKTVNCPICNRSFENTEIEEHVNKCLFLNSCEK---SNSKRQGQQLLSPNE 493
K+ N D C + P N++ ++ + ++ + + F +SC K S + +Q N
Sbjct: 784 KNSNSVDSCRSESSLPNHNQNSDDDDEQDGIGRSGFSSSCSKYQHSVASSSAEQEELKNL 843
Query: 494 KRKKVEKLTALPPNLKSSQSQKISTNENIKIPLSESLRPKSLDQIVGQK 640
K+K + KL +S +S+ +T NIK+ + P +DQ V QK
Sbjct: 844 KKKLLNKLNK-EKKKRSKKSRFEATKSNIKVSPNIDECPDEIDQSVIQK 891
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 557 KISTNENIKIPLSESLRPKSLDQIVGQKQSFGTDSMLRSMLEQNKIPNMIFVG 715
K++T +P E RP LD++V +Q T L +E +P+++F G
Sbjct: 20 KMTTTTASNLPWVEKYRPSKLDELVAHEQIVKT---LTKFIENRTLPHLLFYG 69
>Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical
protein K04D7.2b protein.
Length = 339
Score = 31.1 bits (67), Expect = 0.95
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L+GPPGCGKT LA ++
Sbjct: 119 LYGPPGCGKTLLAKAVA 135
>Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical
protein K04D7.2a protein.
Length = 342
Score = 31.1 bits (67), Expect = 0.95
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L+GPPGCGKT LA ++
Sbjct: 122 LYGPPGCGKTLLAKAVA 138
>U41540-5|AAK39229.2| 666|Caenorhabditis elegans Hypothetical
protein F35H12.4 protein.
Length = 666
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 386 FENTEIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKLTALPPNLKSSQSQKI 562
FENT VN+ LNS +K + + S ++ L+++ P +K SQS+ +
Sbjct: 295 FENTMFNICVNESAVLNSKDKVPYVFFAEVIRSSPNYNSNIKTLSSVEPRIKKSQSESV 353
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
++GPPGCGKT LA ++
Sbjct: 200 MYGPPGCGKTMLAKAVA 216
>U97193-4|AAB52439.1| 691|Caenorhabditis elegans Hypothetical
protein C06A5.6 protein.
Length = 691
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = -3
Query: 507 TFFLFSFGDNSC--CPCLFE------LDFSQELRKRHLFTCSSISVFSKLLLHIGQFTV 355
T ++F DN C C LFE D ++ L T +SV K L H+G+FT+
Sbjct: 146 TIYIFKHRDNKCYRCVILFEDGDNNVSDADRKYMVAFLDTPQVVSVKLKTLFHLGKFTI 204
>U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical
protein T03G11.3 protein.
Length = 349
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 356 TVNCPICNRSFENTEIEEHVNKCLFLNSCEK 448
T CPIC+R F + +E+H + C L S +
Sbjct: 20 TFPCPICDRRFIKSSLEKHESACRKLASLHR 50
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 711 WGPPGCGKTSLANVIS 758
+GPPGCGKT LA I+
Sbjct: 523 YGPPGCGKTLLAKAIA 538
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 711 WGPPGCGKTSLANVIS 758
+GPPGCGKT LA I+
Sbjct: 522 YGPPGCGKTLLAKAIA 537
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 711 WGPPGCGKTSLANVIS 758
+GPPGCGKT LA I+
Sbjct: 522 YGPPGCGKTLLAKAIA 537
>Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical
protein F45G2.6 protein.
Length = 462
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 335 NMSDCT--KTVNCPICNRSFENTEIEEHVNKC 424
++S+CT ++ C C R F ++E+H KC
Sbjct: 99 HLSECTFKSSLKCEKCGRQFAKNDLEKHRAKC 130
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L GPPGCGKT LA ++
Sbjct: 573 LCGPPGCGKTLLAKAVA 589
>AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein.
Length = 462
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 335 NMSDCT--KTVNCPICNRSFENTEIEEHVNKC 424
++S+CT ++ C C R F ++E+H KC
Sbjct: 99 HLSECTFKSSLKCEKCGRQFAKNDLEKHRAKC 130
>AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival
CED-4-interactingprotein MAC-1 protein.
Length = 813
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L GPPGCGKT LA ++
Sbjct: 573 LCGPPGCGKTLLAKAVA 589
>AC025726-36|AAL27268.1| 487|Caenorhabditis elegans Hypothetical
protein Y71G12B.1b protein.
Length = 487
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 407 EHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKLTALPPNLKSSQSQKISTNENIKI 586
E V C N E+ K++ + EK K+ E+ A P K S++ K+ST +
Sbjct: 398 EIVPVCGSPNLIEEKKQKKRKSTVAVVIEKEKEKEEDAAKSPMRKPSETPKVSTPKAAGT 457
Query: 587 PLSESLRPKS 616
PL++ + ++
Sbjct: 458 PLTKFFKKEN 467
>AC025726-35|AAL27267.1| 489|Caenorhabditis elegans Hypothetical
protein Y71G12B.1a protein.
Length = 489
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 407 EHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKLTALPPNLKSSQSQKISTNENIKI 586
E V C N E+ K++ + EK K+ E+ A P K S++ K+ST +
Sbjct: 400 EIVPVCGSPNLIEEKKQKKRKSTVAVVIEKEKEKEEDAAKSPMRKPSETPKVSTPKAAGT 459
Query: 587 PLSESLRPKS 616
PL++ + ++
Sbjct: 460 PLTKFFKKEN 469
>Z78544-2|CAB01758.1| 368|Caenorhabditis elegans Hypothetical
protein K04G11.3 protein.
Length = 368
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Frame = +2
Query: 443 EKSNSK-RQGQQLLSPNEKRKKVEKLTALPPNLKS-SQSQKISTNENIKIPLSESLRPKS 616
EKSN + ++ Q +S ++ ++T+ P K S + K+ ENI + S R
Sbjct: 177 EKSNKQVKKPQCEISMENRQAGNNEMTSPEPTYKELSNTVKLLQQENINLKNSVQTRKDQ 236
Query: 617 LDQIVGQKQSFGT------DSMLRSMLEQNKIPNMIFVGSTRLRKDVIS 745
Q+ QK+ + + + + + + E+ ++ + +TRL + +S
Sbjct: 237 FSQLYAQKERYESTNEIEINRLKKCVEEEIELNRQLIAENTRLATEQVS 285
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 443 EKSNSKRQGQQLLSPNEKRKKVEKLTALPPN-LKSSQSQKISTNENIKIPLSESLRPKSL 619
EKS K ++L SP K K EK P + K +S + S E++K P + P+ +
Sbjct: 1605 EKSPEKSVVEELKSP--KEKSPEKADDKPKSPTKKEKSPEKSATEDVKSPTKKEKSPEKV 1662
Query: 620 DQ 625
++
Sbjct: 1663 EE 1664
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 443 EKSNSKRQGQQLLSPNEKRKKVEKLTALPPN-LKSSQSQKISTNENIKIPLSESLRPKSL 619
EKS K ++L SP K K EK P + K +S + S E++K P + P+ +
Sbjct: 1605 EKSPEKSVVEELKSP--KEKSPEKADDKPKSPTKKEKSPEKSATEDVKSPTKKEKSPEKV 1662
Query: 620 DQ 625
++
Sbjct: 1663 EE 1664
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 443 EKSNSKRQGQQLLSPNEKRKKVEKLTALPPN-LKSSQSQKISTNENIKIPLSESLRPKSL 619
EKS K ++L SP K K EK P + K +S + S E++K P + P+ +
Sbjct: 1605 EKSPEKSVVEELKSP--KEKSPEKADDKPKSPTKKEKSPEKSATEDVKSPTKKEKSPEKV 1662
Query: 620 DQ 625
++
Sbjct: 1663 EE 1664
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 443 EKSNSKRQGQQLLSPNEKRKKVEKLTALPPN-LKSSQSQKISTNENIKIPLSESLRPKSL 619
EKS K ++L SP K K EK P + K +S + S E++K P + P+ +
Sbjct: 1605 EKSPEKSVVEELKSP--KEKSPEKADDKPKSPTKKEKSPEKSATEDVKSPTKKEKSPEKV 1662
Query: 620 DQ 625
++
Sbjct: 1663 EE 1664
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L GPPGCGKT LA ++
Sbjct: 323 LTGPPGCGKTLLAKALA 339
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 708 LWGPPGCGKTSLANVIS 758
L GPPGCGKT LA ++
Sbjct: 323 LTGPPGCGKTLLAKALA 339
>Z81489-9|CAE17759.1| 326|Caenorhabditis elegans Hypothetical
protein C55A1.12 protein.
Length = 326
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 585 IFMFSFVLIFCDCELFKFGGKAVNFSTFFL 496
+ M F LI C ++F F KA+N STF++
Sbjct: 78 LMMVGF-LIICKFKIFNFPLKALNISTFYI 106
>Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical
protein B0464.6 protein.
Length = 643
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 485 PNEKRKKV-EKLTALPPNLKSSQSQKISTN-ENIKIPLSESLRPKSLDQIVGQKQSFGTD 658
PN ++ V K+ + PP +SS+S I + +N+ L S++ L + + FGT
Sbjct: 123 PNALKQLVYNKVQSKPPRPESSKSTPIVPDAQNV---LDTSVQSNDLSWVDAHR--FGTP 177
Query: 659 SMLRSMLEQNKIPN 700
S S L+Q+ PN
Sbjct: 178 SFKSSQLQQSPSPN 191
>AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical
protein F19B10.4 protein.
Length = 464
Score = 28.3 bits (60), Expect = 6.7
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Frame = +2
Query: 278 NIRLGLKVSSPGS*N*KDKNMSDCTKTVNCPICNRSFENTEIEEHVNKCLFLNSCEKSNS 457
N + LK+ S N + K D K +N R +E + E + E+ N+
Sbjct: 231 NNTMSLKLRSAEKKNSELKKSLDEMK-MNFKKFTREYEKEKRELEKQMDEQRQTLEQDNA 289
Query: 458 KRQGQQLLSPNEKRKKVE----KLTALPPNLKSSQSQKISTNENI--KIPLSESLRPK 613
+ Q + + E R++++ KL A PP SSQ Q + N+ K SL PK
Sbjct: 290 RNQSEYDMKMREMREELQNLERKLEARPPCCCSSQKQSEESERNVLSKREKLLSLEPK 347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,768,457
Number of Sequences: 27780
Number of extensions: 384130
Number of successful extensions: 1373
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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